- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x F0Y: methyl 4-[(3-{(1R)-2-cyano-1-[(5-methyl-3H-imidazo[4,5-b]pyridin-2-yl)amino]ethyl}phenyl)methyl]piperidine-1-carboxylate(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain I: R.137, H.138
- Ligands: F0Y.1
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.4: 2 residues within 4Å:- Chain A: S.121, K.122
Ligand excluded by PLIPSO4.7: 6 residues within 4Å:- Chain B: S.39, P.40, S.41
- Chain L: R.137, H.138
- Ligands: F0Y.6
Ligand excluded by PLIPSO4.8: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.9: 2 residues within 4Å:- Chain B: S.121, K.122
Ligand excluded by PLIPSO4.12: 6 residues within 4Å:- Chain C: S.39, P.40, S.41
- Chain J: R.137, H.138
- Ligands: F0Y.11
Ligand excluded by PLIPSO4.13: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.14: 2 residues within 4Å:- Chain C: S.121, K.122
Ligand excluded by PLIPSO4.17: 6 residues within 4Å:- Chain D: S.39, P.40, S.41
- Chain K: R.137, H.138
- Ligands: F0Y.16
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.19: 2 residues within 4Å:- Chain D: S.121, K.122
Ligand excluded by PLIPSO4.22: 6 residues within 4Å:- Chain A: R.137, H.138
- Chain E: S.39, P.40, S.41
- Ligands: F0Y.21
Ligand excluded by PLIPSO4.23: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain E: S.121, K.122
Ligand excluded by PLIPSO4.27: 6 residues within 4Å:- Chain D: R.137, H.138
- Chain F: S.39, P.40, S.41
- Ligands: F0Y.26
Ligand excluded by PLIPSO4.28: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.29: 2 residues within 4Å:- Chain F: S.121, K.122
Ligand excluded by PLIPSO4.32: 6 residues within 4Å:- Chain B: R.137, H.138
- Chain G: S.39, P.40, S.41
- Ligands: F0Y.31
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain G: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.34: 2 residues within 4Å:- Chain G: S.121, K.122
Ligand excluded by PLIPSO4.37: 6 residues within 4Å:- Chain C: R.137, H.138
- Chain H: S.39, P.40, S.41
- Ligands: F0Y.36
Ligand excluded by PLIPSO4.38: 4 residues within 4Å:- Chain H: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.39: 2 residues within 4Å:- Chain H: S.121, K.122
Ligand excluded by PLIPSO4.42: 6 residues within 4Å:- Chain E: R.137, H.138
- Chain I: S.39, P.40, S.41
- Ligands: F0Y.41
Ligand excluded by PLIPSO4.43: 4 residues within 4Å:- Chain I: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.44: 2 residues within 4Å:- Chain I: S.121, K.122
Ligand excluded by PLIPSO4.47: 6 residues within 4Å:- Chain H: R.137, H.138
- Chain J: S.39, P.40, S.41
- Ligands: F0Y.46
Ligand excluded by PLIPSO4.48: 4 residues within 4Å:- Chain J: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.49: 2 residues within 4Å:- Chain J: S.121, K.122
Ligand excluded by PLIPSO4.52: 6 residues within 4Å:- Chain F: R.137, H.138
- Chain K: S.39, P.40, S.41
- Ligands: F0Y.51
Ligand excluded by PLIPSO4.53: 4 residues within 4Å:- Chain K: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.54: 2 residues within 4Å:- Chain K: S.121, K.122
Ligand excluded by PLIPSO4.57: 6 residues within 4Å:- Chain G: R.137, H.138
- Chain L: S.39, P.40, S.41
- Ligands: F0Y.56
Ligand excluded by PLIPSO4.58: 4 residues within 4Å:- Chain L: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.59: 2 residues within 4Å:- Chain L: S.121, K.122
Ligand excluded by PLIPSO4.62: 2 residues within 4Å:- Chain M: S.121, K.122
Ligand excluded by PLIPSO4.63: 4 residues within 4Å:- Chain M: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.67: 2 residues within 4Å:- Chain N: S.121, K.122
Ligand excluded by PLIPSO4.68: 4 residues within 4Å:- Chain N: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.72: 2 residues within 4Å:- Chain O: S.121, K.122
Ligand excluded by PLIPSO4.73: 4 residues within 4Å:- Chain O: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.77: 2 residues within 4Å:- Chain P: S.121, K.122
Ligand excluded by PLIPSO4.78: 4 residues within 4Å:- Chain P: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.82: 2 residues within 4Å:- Chain Q: S.121, K.122
Ligand excluded by PLIPSO4.83: 4 residues within 4Å:- Chain Q: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.87: 2 residues within 4Å:- Chain R: S.121, K.122
Ligand excluded by PLIPSO4.88: 4 residues within 4Å:- Chain R: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.92: 2 residues within 4Å:- Chain S: S.121, K.122
Ligand excluded by PLIPSO4.93: 4 residues within 4Å:- Chain S: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.97: 2 residues within 4Å:- Chain T: S.121, K.122
Ligand excluded by PLIPSO4.98: 4 residues within 4Å:- Chain T: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.102: 2 residues within 4Å:- Chain U: S.121, K.122
Ligand excluded by PLIPSO4.103: 4 residues within 4Å:- Chain U: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.107: 2 residues within 4Å:- Chain V: S.121, K.122
Ligand excluded by PLIPSO4.108: 4 residues within 4Å:- Chain V: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.112: 2 residues within 4Å:- Chain W: S.121, K.122
Ligand excluded by PLIPSO4.113: 4 residues within 4Å:- Chain W: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.117: 2 residues within 4Å:- Chain X: S.121, K.122
Ligand excluded by PLIPSO4.118: 4 residues within 4Å:- Chain X: H.18, R.91, S.128, S.129
Ligand excluded by PLIP- 36 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 5 residues within 4Å:- Chain A: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.10: 5 residues within 4Å:- Chain B: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.15: 5 residues within 4Å:- Chain C: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.20: 5 residues within 4Å:- Chain D: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.25: 5 residues within 4Å:- Chain E: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.30: 5 residues within 4Å:- Chain F: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.35: 5 residues within 4Å:- Chain G: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.40: 5 residues within 4Å:- Chain H: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.45: 5 residues within 4Å:- Chain I: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.50: 5 residues within 4Å:- Chain J: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.55: 5 residues within 4Å:- Chain K: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.60: 5 residues within 4Å:- Chain L: N.16, I.19, D.20, T.23, W.124
Ligand excluded by PLIPPG4.64: 7 residues within 4Å:- Chain M: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.65: 3 residues within 4Å:- Chain M: Y.98
- Chain Q: L.131
- Ligands: F0Y.61
Ligand excluded by PLIPPG4.69: 7 residues within 4Å:- Chain N: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.70: 3 residues within 4Å:- Chain N: Y.98
- Chain S: L.131
- Ligands: F0Y.66
Ligand excluded by PLIPPG4.74: 7 residues within 4Å:- Chain O: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.75: 3 residues within 4Å:- Chain O: Y.98
- Chain T: L.131
- Ligands: F0Y.71
Ligand excluded by PLIPPG4.79: 7 residues within 4Å:- Chain P: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.80: 3 residues within 4Å:- Chain P: Y.98
- Chain R: L.131
- Ligands: F0Y.76
Ligand excluded by PLIPPG4.84: 7 residues within 4Å:- Chain Q: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.85: 3 residues within 4Å:- Chain Q: Y.98
- Chain U: L.131
- Ligands: F0Y.81
Ligand excluded by PLIPPG4.89: 7 residues within 4Å:- Chain R: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.90: 3 residues within 4Å:- Chain R: Y.98
- Chain W: L.131
- Ligands: F0Y.86
Ligand excluded by PLIPPG4.94: 7 residues within 4Å:- Chain S: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.95: 3 residues within 4Å:- Chain S: Y.98
- Chain X: L.131
- Ligands: F0Y.91
Ligand excluded by PLIPPG4.99: 7 residues within 4Å:- Chain T: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.100: 3 residues within 4Å:- Chain T: Y.98
- Chain V: L.131
- Ligands: F0Y.96
Ligand excluded by PLIPPG4.104: 7 residues within 4Å:- Chain U: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.105: 3 residues within 4Å:- Chain M: L.131
- Chain U: Y.98
- Ligands: F0Y.101
Ligand excluded by PLIPPG4.109: 7 residues within 4Å:- Chain V: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.110: 3 residues within 4Å:- Chain O: L.131
- Chain V: Y.98
- Ligands: F0Y.106
Ligand excluded by PLIPPG4.114: 7 residues within 4Å:- Chain W: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.115: 3 residues within 4Å:- Chain P: L.131
- Chain W: Y.98
- Ligands: F0Y.111
Ligand excluded by PLIPPG4.119: 7 residues within 4Å:- Chain X: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.120: 3 residues within 4Å:- Chain N: L.131
- Chain X: Y.98
- Ligands: F0Y.116
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x F0Y: methyl 4-[(3-{(1R)-2-cyano-1-[(5-methyl-3H-imidazo[4,5-b]pyridin-2-yl)amino]ethyl}phenyl)methyl]piperidine-1-carboxylate(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 36 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B