- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- homo-24-mer
- Ligands
- 72 x SO4: SULFATE ION(Non-functional Binders)
- 12 x EXV: 3-[(1S,2S)-2-(7-hydroxy-1H-benzimidazol-2-yl)cyclopentyl]benzoic acid(Non-covalent)
EXV.49: 16 residues within 4Å:- Chain M: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain T: E.134, V.135, H.138
12 PLIP interactions:10 interactions with chain M, 2 interactions with chain T- Hydrophobic interactions: M:A.37, M:F.70, M:L.102, M:L.109, T:V.135
- Hydrogen bonds: M:M.74, M:A.75, M:Y.98, M:N.106, T:E.134
- Water bridges: M:R.88
- Salt bridges: M:R.88
EXV.52: 16 residues within 4Å:- Chain N: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain R: E.134, V.135, H.138
12 PLIP interactions:10 interactions with chain N, 2 interactions with chain R- Hydrophobic interactions: N:A.37, N:F.70, N:L.102, N:L.109, R:V.135
- Hydrogen bonds: N:M.74, N:A.75, N:Y.98, N:N.106, R:E.134
- Water bridges: N:R.88
- Salt bridges: N:R.88
EXV.55: 16 residues within 4Å:- Chain O: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain Q: E.134, V.135, H.138
12 PLIP interactions:11 interactions with chain O, 1 interactions with chain Q- Hydrophobic interactions: O:A.37, O:F.70, O:L.102, O:L.109, Q:V.135
- Hydrogen bonds: O:M.74, O:A.75, O:Y.98, O:Y.98, O:N.106
- Water bridges: O:R.88
- Salt bridges: O:R.88
EXV.58: 16 residues within 4Å:- Chain P: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain S: E.134, V.135, H.138
12 PLIP interactions:11 interactions with chain P, 1 interactions with chain S- Hydrophobic interactions: P:A.37, P:F.70, P:L.102, P:L.109, S:V.135
- Hydrogen bonds: P:M.74, P:A.75, P:Y.98, P:Y.98, P:N.106
- Water bridges: P:R.88
- Salt bridges: P:R.88
EXV.61: 16 residues within 4Å:- Chain Q: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain X: E.134, V.135, H.138
12 PLIP interactions:11 interactions with chain Q, 1 interactions with chain X- Hydrophobic interactions: Q:A.37, Q:F.70, Q:L.102, Q:L.109, X:V.135
- Hydrogen bonds: Q:M.74, Q:A.75, Q:Y.98, Q:Y.98, Q:N.106
- Water bridges: Q:R.88
- Salt bridges: Q:R.88
EXV.64: 16 residues within 4Å:- Chain R: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain V: E.134, V.135, H.138
12 PLIP interactions:2 interactions with chain V, 10 interactions with chain R- Hydrophobic interactions: V:V.135, R:A.37, R:F.70, R:L.102, R:L.109
- Hydrogen bonds: V:E.134, R:M.74, R:A.75, R:Y.98, R:N.106
- Water bridges: R:R.88
- Salt bridges: R:R.88
EXV.67: 16 residues within 4Å:- Chain S: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain U: E.134, V.135, H.138
12 PLIP interactions:11 interactions with chain S, 1 interactions with chain U- Hydrophobic interactions: S:A.37, S:F.70, S:L.102, S:L.109, U:V.135
- Hydrogen bonds: S:M.74, S:A.75, S:Y.98, S:Y.98, S:N.106
- Water bridges: S:R.88
- Salt bridges: S:R.88
EXV.70: 16 residues within 4Å:- Chain T: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
- Chain W: E.134, V.135, H.138
12 PLIP interactions:10 interactions with chain T, 2 interactions with chain W- Hydrophobic interactions: T:A.37, T:F.70, T:L.102, T:L.109, W:V.135
- Hydrogen bonds: T:M.74, T:A.75, T:Y.98, T:N.106, W:E.134
- Water bridges: T:R.88
- Salt bridges: T:R.88
EXV.73: 16 residues within 4Å:- Chain P: E.134, V.135, H.138
- Chain U: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
12 PLIP interactions:10 interactions with chain U, 2 interactions with chain P- Hydrophobic interactions: U:A.37, U:F.70, U:L.102, U:L.109, P:V.135
- Hydrogen bonds: U:M.74, U:A.75, U:Y.98, U:N.106, P:E.134
- Water bridges: U:R.88
- Salt bridges: U:R.88
EXV.76: 16 residues within 4Å:- Chain N: E.134, V.135, H.138
- Chain V: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
12 PLIP interactions:11 interactions with chain V, 1 interactions with chain N- Hydrophobic interactions: V:A.37, V:F.70, V:L.102, V:L.109, N:V.135
- Hydrogen bonds: V:M.74, V:A.75, V:Y.98, V:Y.98, V:N.106
- Water bridges: V:R.88
- Salt bridges: V:R.88
EXV.79: 16 residues within 4Å:- Chain M: E.134, V.135, H.138
- Chain W: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
12 PLIP interactions:11 interactions with chain W, 1 interactions with chain M- Hydrophobic interactions: W:A.37, W:F.70, W:L.102, W:L.109, M:V.135
- Hydrogen bonds: W:M.74, W:A.75, W:Y.98, W:Y.98, W:N.106
- Water bridges: W:R.88
- Salt bridges: W:R.88
EXV.82: 16 residues within 4Å:- Chain O: E.134, V.135, H.138
- Chain X: G.9, A.37, F.70, D.72, L.73, M.74, A.75, R.88, Y.98, L.102, M.105, N.106, L.109
12 PLIP interactions:10 interactions with chain X, 2 interactions with chain O- Hydrophobic interactions: X:A.37, X:F.70, X:L.102, X:L.109, O:V.135
- Hydrogen bonds: X:M.74, X:A.75, X:Y.98, X:N.106, O:E.134
- Water bridges: X:R.88
- Salt bridges: X:R.88
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, R.J. et al., Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria. J. Med. Chem. (2018)
- Release Date
- 2018-03-14
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- homo-24-mer
- Ligands
- 72 x SO4: SULFATE ION(Non-functional Binders)
- 12 x EXV: 3-[(1S,2S)-2-(7-hydroxy-1H-benzimidazol-2-yl)cyclopentyl]benzoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, R.J. et al., Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria. J. Med. Chem. (2018)
- Release Date
- 2018-03-14
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A