- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 24 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.3: 10 residues within 4Å:- Chain A: A.37, F.70, D.72, L.73, M.74, R.88, N.106
- Chain I: E.134, V.135, H.138
Ligand excluded by PLIPPG4.8: 10 residues within 4Å:- Chain B: A.37, F.70, D.72, L.73, M.74, R.88, N.106
- Chain L: E.134, V.135, H.138
Ligand excluded by PLIPPG4.13: 10 residues within 4Å:- Chain C: A.37, F.70, D.72, L.73, M.74, R.88, N.106
- Chain J: E.134, V.135, H.138
Ligand excluded by PLIPPG4.18: 10 residues within 4Å:- Chain D: A.37, F.70, D.72, L.73, M.74, R.88, N.106
- Chain K: E.134, V.135, H.138
Ligand excluded by PLIPPG4.23: 10 residues within 4Å:- Chain A: E.134, V.135, H.138
- Chain E: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.28: 10 residues within 4Å:- Chain D: E.134, V.135, H.138
- Chain F: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.33: 10 residues within 4Å:- Chain B: E.134, V.135, H.138
- Chain G: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.38: 10 residues within 4Å:- Chain C: E.134, V.135, H.138
- Chain H: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.43: 10 residues within 4Å:- Chain E: E.134, V.135, H.138
- Chain I: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.48: 10 residues within 4Å:- Chain H: E.134, V.135, H.138
- Chain J: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.53: 10 residues within 4Å:- Chain F: E.134, V.135, H.138
- Chain K: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.58: 10 residues within 4Å:- Chain G: E.134, V.135, H.138
- Chain L: A.37, F.70, D.72, L.73, M.74, R.88, N.106
Ligand excluded by PLIPPG4.64: 7 residues within 4Å:- Chain M: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.69: 7 residues within 4Å:- Chain N: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.74: 7 residues within 4Å:- Chain O: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.79: 7 residues within 4Å:- Chain P: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.84: 7 residues within 4Å:- Chain Q: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.89: 7 residues within 4Å:- Chain R: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.94: 7 residues within 4Å:- Chain S: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.99: 7 residues within 4Å:- Chain T: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.104: 7 residues within 4Å:- Chain U: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.109: 7 residues within 4Å:- Chain V: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.114: 7 residues within 4Å:- Chain W: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.119: 7 residues within 4Å:- Chain X: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIP- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.4: 6 residues within 4Å:- Chain A: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.5
Ligand excluded by PLIPDMS.9: 6 residues within 4Å:- Chain B: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.10
Ligand excluded by PLIPDMS.14: 6 residues within 4Å:- Chain C: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.15
Ligand excluded by PLIPDMS.19: 6 residues within 4Å:- Chain D: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.20
Ligand excluded by PLIPDMS.24: 6 residues within 4Å:- Chain E: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.25
Ligand excluded by PLIPDMS.29: 6 residues within 4Å:- Chain F: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.30
Ligand excluded by PLIPDMS.34: 6 residues within 4Å:- Chain G: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.35
Ligand excluded by PLIPDMS.39: 6 residues within 4Å:- Chain H: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.40
Ligand excluded by PLIPDMS.44: 6 residues within 4Å:- Chain I: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.45
Ligand excluded by PLIPDMS.49: 6 residues within 4Å:- Chain J: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.50
Ligand excluded by PLIPDMS.54: 6 residues within 4Å:- Chain K: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.55
Ligand excluded by PLIPDMS.59: 6 residues within 4Å:- Chain L: Y.7, P.8, G.9, R.88, G.89
- Ligands: SO4.60
Ligand excluded by PLIPDMS.63: 4 residues within 4Å:- Chain M: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.68: 4 residues within 4Å:- Chain N: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.73: 4 residues within 4Å:- Chain O: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.78: 4 residues within 4Å:- Chain P: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.83: 4 residues within 4Å:- Chain Q: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.88: 4 residues within 4Å:- Chain R: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.93: 4 residues within 4Å:- Chain S: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.98: 4 residues within 4Å:- Chain T: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.103: 4 residues within 4Å:- Chain U: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.108: 4 residues within 4Å:- Chain V: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.113: 4 residues within 4Å:- Chain W: T.26, Q.27, F.29, D.30
Ligand excluded by PLIPDMS.118: 4 residues within 4Å:- Chain X: T.26, Q.27, F.29, D.30
Ligand excluded by PLIP- 12 x F0V: 2-benzyl-7-[(3-chloro-4-methylphenyl)amino]-5-methyl-3H-[1,2,4]triazolo[1,5-a]pyrimidin-8-ium(Non-covalent)
F0V.61: 15 residues within 4Å:- Chain M: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain Q: L.131, E.134, V.135
11 PLIP interactions:7 interactions with chain M, 4 interactions with chain Q- Hydrophobic interactions: M:T.10, M:A.37, M:F.70, M:L.109, Q:L.131, Q:L.131, Q:E.134, Q:V.135
- Hydrogen bonds: M:M.74
- Water bridges: M:A.75
- Halogen bonds: M:Y.98
F0V.66: 15 residues within 4Å:- Chain N: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain S: L.131, E.134, V.135
11 PLIP interactions:7 interactions with chain N, 4 interactions with chain S- Hydrophobic interactions: N:T.10, N:A.37, N:F.70, N:L.109, S:L.131, S:L.131, S:E.134, S:V.135
- Hydrogen bonds: N:M.74
- Water bridges: N:A.75
- Halogen bonds: N:Y.98
F0V.71: 15 residues within 4Å:- Chain O: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain T: L.131, E.134, V.135
12 PLIP interactions:4 interactions with chain T, 8 interactions with chain O- Hydrophobic interactions: T:L.131, T:L.131, T:E.134, T:V.135, O:T.10, O:A.37, O:F.70, O:L.109
- Hydrogen bonds: O:M.74
- Water bridges: O:A.75, O:Y.98
- Halogen bonds: O:Y.98
F0V.76: 15 residues within 4Å:- Chain P: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain R: L.131, E.134, V.135
12 PLIP interactions:8 interactions with chain P, 4 interactions with chain R- Hydrophobic interactions: P:T.10, P:A.37, P:F.70, P:L.109, R:L.131, R:L.131, R:E.134, R:V.135
- Hydrogen bonds: P:M.74
- Water bridges: P:A.75, P:Y.98
- Halogen bonds: P:Y.98
F0V.81: 15 residues within 4Å:- Chain Q: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain U: L.131, E.134, V.135
12 PLIP interactions:4 interactions with chain U, 8 interactions with chain Q- Hydrophobic interactions: U:L.131, U:L.131, U:E.134, U:V.135, Q:T.10, Q:A.37, Q:F.70, Q:L.109
- Hydrogen bonds: Q:M.74
- Water bridges: Q:A.75, Q:Y.98
- Halogen bonds: Q:Y.98
F0V.86: 15 residues within 4Å:- Chain R: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain W: L.131, E.134, V.135
11 PLIP interactions:7 interactions with chain R, 4 interactions with chain W- Hydrophobic interactions: R:T.10, R:A.37, R:F.70, R:L.109, W:L.131, W:L.131, W:E.134, W:V.135
- Hydrogen bonds: R:M.74
- Water bridges: R:A.75
- Halogen bonds: R:Y.98
F0V.91: 15 residues within 4Å:- Chain S: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain X: L.131, E.134, V.135
12 PLIP interactions:8 interactions with chain S, 4 interactions with chain X- Hydrophobic interactions: S:T.10, S:A.37, S:F.70, S:L.109, X:L.131, X:L.131, X:E.134, X:V.135
- Hydrogen bonds: S:M.74
- Water bridges: S:A.75, S:Y.98
- Halogen bonds: S:Y.98
F0V.96: 15 residues within 4Å:- Chain T: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
- Chain V: L.131, E.134, V.135
11 PLIP interactions:7 interactions with chain T, 4 interactions with chain V- Hydrophobic interactions: T:T.10, T:A.37, T:F.70, T:L.109, V:L.131, V:L.131, V:E.134, V:V.135
- Hydrogen bonds: T:M.74
- Water bridges: T:A.75
- Halogen bonds: T:Y.98
F0V.101: 15 residues within 4Å:- Chain M: L.131, E.134, V.135
- Chain U: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
12 PLIP interactions:8 interactions with chain U, 4 interactions with chain M- Hydrophobic interactions: U:T.10, U:A.37, U:F.70, U:L.109, M:L.131, M:L.131, M:E.134, M:V.135
- Hydrogen bonds: U:M.74
- Water bridges: U:A.75, U:Y.98
- Halogen bonds: U:Y.98
F0V.106: 15 residues within 4Å:- Chain O: L.131, E.134, V.135
- Chain V: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
11 PLIP interactions:7 interactions with chain V, 4 interactions with chain O- Hydrophobic interactions: V:T.10, V:A.37, V:F.70, V:L.109, O:L.131, O:L.131, O:E.134, O:V.135
- Hydrogen bonds: V:M.74
- Water bridges: V:A.75
- Halogen bonds: V:Y.98
F0V.111: 15 residues within 4Å:- Chain P: L.131, E.134, V.135
- Chain W: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
11 PLIP interactions:4 interactions with chain P, 7 interactions with chain W- Hydrophobic interactions: P:L.131, P:L.131, P:E.134, P:V.135, W:T.10, W:A.37, W:F.70, W:L.109
- Hydrogen bonds: W:M.74
- Water bridges: W:A.75
- Halogen bonds: W:Y.98
F0V.116: 15 residues within 4Å:- Chain N: L.131, E.134, V.135
- Chain X: G.9, T.10, A.37, F.70, L.73, M.74, Y.98, Q.101, L.102, M.105, N.106, L.109
12 PLIP interactions:8 interactions with chain X, 4 interactions with chain N- Hydrophobic interactions: X:T.10, X:A.37, X:F.70, X:L.109, N:L.131, N:L.131, N:E.134, N:V.135
- Hydrogen bonds: X:M.74
- Water bridges: X:A.75, X:Y.98
- Halogen bonds: X:Y.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 24 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 24 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 12 x F0V: 2-benzyl-7-[(3-chloro-4-methylphenyl)amino]-5-methyl-3H-[1,2,4]triazolo[1,5-a]pyrimidin-8-ium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
BE
BF
BG
BH
BI
BJ
BK
BL
BM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A