- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F0Y: methyl 4-[(3-{(1R)-2-cyano-1-[(5-methyl-3H-imidazo[4,5-b]pyridin-2-yl)amino]ethyl}phenyl)methyl]piperidine-1-carboxylate(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain E: R.137, H.138
- Ligands: F0Y.1
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain A- Salt bridges: E:R.137, E:H.138
- Hydrogen bonds: A:S.41, A:S.41, A:S.41
SO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.129, A:S.129
- Water bridges: A:F.11, A:H.18, A:S.129, A:S.130, A:S.130
- Salt bridges: A:H.18, A:R.91
SO4.4: 4 residues within 4Å:- Chain A: S.121, K.122
- Chain B: H.104, R.107
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:H.104, A:R.24, A:S.121, A:K.122
- Salt bridges: B:R.107, A:K.122
- Water bridges: A:R.24, A:K.122
SO4.7: 4 residues within 4Å:- Chain A: H.104, R.107
- Chain B: S.121, K.122
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.122
- Water bridges: B:R.24
- Salt bridges: B:K.122, A:H.104, A:R.107
SO4.8: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.129
- Water bridges: B:H.18, B:S.129, B:S.130
- Salt bridges: B:H.18, B:R.91
SO4.12: 6 residues within 4Å:- Chain A: R.137, H.138
- Chain C: S.39, P.40, S.41
- Ligands: F0Y.11
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain C- Salt bridges: A:R.137, A:H.138
- Hydrogen bonds: C:S.41, C:S.41, C:S.41
SO4.13: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:S.129, C:S.129
- Water bridges: C:F.11, C:H.18, C:S.129, C:S.130, C:S.130
- Salt bridges: C:H.18, C:R.91
SO4.14: 4 residues within 4Å:- Chain C: S.121, K.122
- Chain D: H.104, R.107
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.24, C:S.121, C:K.122
- Water bridges: C:R.24, C:K.122
- Salt bridges: C:K.122, D:R.107
SO4.17: 4 residues within 4Å:- Chain C: H.104, R.107
- Chain D: S.121, K.122
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:K.122
- Water bridges: D:R.24
- Salt bridges: D:K.122, C:H.104, C:R.107
SO4.18: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.129
- Water bridges: D:H.18, D:S.129, D:S.130
- Salt bridges: D:H.18, D:R.91
SO4.22: 6 residues within 4Å:- Chain C: R.137, H.138
- Chain E: S.39, P.40, S.41
- Ligands: F0Y.21
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain E- Salt bridges: C:R.137, C:H.138
- Hydrogen bonds: E:S.41, E:S.41, E:S.41
SO4.23: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:S.129, E:S.129
- Water bridges: E:F.11, E:H.18, E:S.129, E:S.130, E:S.130
- Salt bridges: E:H.18, E:R.91
SO4.24: 4 residues within 4Å:- Chain E: S.121, K.122
- Chain F: H.104, R.107
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:R.24, E:S.121, E:K.122
- Water bridges: E:R.24, E:K.122
- Salt bridges: E:K.122, F:R.107
SO4.27: 4 residues within 4Å:- Chain E: H.104, R.107
- Chain F: S.121, K.122
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain F- Salt bridges: E:H.104, E:R.107, F:K.122
- Hydrogen bonds: F:K.122
- Water bridges: F:R.24
SO4.28: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:S.129
- Water bridges: F:T.10, F:H.18, F:S.129, F:S.130
- Salt bridges: F:H.18, F:R.91
- 9 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 5 residues within 4Å:- Chain A: N.16, I.19, D.20, T.23, W.124
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.20
PG4.9: 7 residues within 4Å:- Chain B: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.27
- Water bridges: B:R.24
PG4.10: 3 residues within 4Å:- Chain B: Y.98
- Chain D: L.131
- Ligands: F0Y.6
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.98
PG4.15: 5 residues within 4Å:- Chain C: N.16, I.19, D.20, T.23, W.124
1 PLIP interactions:1 interactions with chain C- Water bridges: C:T.23
PG4.19: 7 residues within 4Å:- Chain D: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.27
- Water bridges: D:D.20, D:R.24
PG4.20: 3 residues within 4Å:- Chain D: Y.98
- Chain F: L.131
- Ligands: F0Y.16
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.98
PG4.25: 5 residues within 4Å:- Chain E: N.16, I.19, D.20, T.23, W.124
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:D.20
PG4.29: 7 residues within 4Å:- Chain F: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Q.27
- Water bridges: F:R.24
PG4.30: 3 residues within 4Å:- Chain B: L.131
- Chain F: Y.98
- Ligands: F0Y.26
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F0Y: methyl 4-[(3-{(1R)-2-cyano-1-[(5-methyl-3H-imidazo[4,5-b]pyridin-2-yl)amino]ethyl}phenyl)methyl]piperidine-1-carboxylate(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 9 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B