- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F14: 2-({(1R)-1-[3-(4-methoxyphenoxy)phenyl]ethyl}amino)-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: S.121, K.122
- Chain B: H.104, R.107
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.4: 5 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain E: R.137, H.138
Ligand excluded by PLIPSO4.7: 7 residues within 4Å:- Chain A: T.26, Q.27, M.28, F.29, D.30
- Chain B: M.1, K.3
Ligand excluded by PLIPSO4.9: 4 residues within 4Å:- Chain A: H.104, R.107
- Chain B: S.121, K.122
Ligand excluded by PLIPSO4.10: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.14: 4 residues within 4Å:- Chain C: S.121, K.122
- Chain D: H.104, R.107
Ligand excluded by PLIPSO4.15: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.16: 5 residues within 4Å:- Chain A: R.137, H.138
- Chain C: S.39, P.40, S.41
Ligand excluded by PLIPSO4.19: 7 residues within 4Å:- Chain C: T.26, Q.27, M.28, F.29, D.30
- Chain D: M.1, K.3
Ligand excluded by PLIPSO4.21: 4 residues within 4Å:- Chain C: H.104, R.107
- Chain D: S.121, K.122
Ligand excluded by PLIPSO4.22: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.26: 4 residues within 4Å:- Chain E: S.121, K.122
- Chain F: H.104, R.107
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.28: 5 residues within 4Å:- Chain C: R.137, H.138
- Chain E: S.39, P.40, S.41
Ligand excluded by PLIPSO4.31: 7 residues within 4Å:- Chain E: T.26, Q.27, M.28, F.29, D.30
- Chain F: M.1, K.3
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain E: H.104, R.107
- Chain F: S.121, K.122
Ligand excluded by PLIPSO4.34: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
Ligand excluded by PLIP- 12 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 5 residues within 4Å:- Chain A: K.42, Y.98, E.99, L.102
- Ligands: F14.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.42
- Water bridges: A:Y.98
PG4.6: 7 residues within 4Å:- Chain A: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.20, A:Q.27
- Water bridges: A:N.16
PG4.11: 7 residues within 4Å:- Chain B: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.27
PG4.12: 5 residues within 4Å:- Chain B: R.88, Y.98, E.99, L.102
- Ligands: F14.8
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain B- Water bridges: D:E.134, B:Y.98, B:Y.98, B:E.99
PG4.17: 5 residues within 4Å:- Chain C: K.42, Y.98, E.99, L.102
- Ligands: F14.13
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.42, C:Y.98
PG4.18: 7 residues within 4Å:- Chain C: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.27
- Water bridges: C:N.16
PG4.23: 7 residues within 4Å:- Chain D: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.27
- Water bridges: D:D.20, D:D.20
PG4.24: 5 residues within 4Å:- Chain D: R.88, Y.98, E.99, L.102
- Ligands: F14.20
4 PLIP interactions:4 interactions with chain D- Water bridges: D:Y.98, D:Y.98, D:E.99, D:E.99
PG4.29: 5 residues within 4Å:- Chain E: K.42, Y.98, E.99, L.102
- Ligands: F14.25
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:K.42
- Water bridges: E:Y.98
PG4.30: 7 residues within 4Å:- Chain E: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.20, E:Q.27
- Water bridges: E:N.16
PG4.35: 7 residues within 4Å:- Chain F: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:Q.27
PG4.36: 5 residues within 4Å:- Chain F: R.88, Y.98, E.99, L.102
- Ligands: F14.32
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Y.98
- Water bridges: F:E.99, F:E.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x F14: 2-({(1R)-1-[3-(4-methoxyphenoxy)phenyl]ethyl}amino)-5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7(6H)-one(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 12 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B