- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x F1D: methyl 4-(3-{(1R)-2-cyano-1-[(5-methyl-7-oxo-6,7-dihydro[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino]ethyl}phenoxy)piperidine-1-carboxylate(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: S.39, P.40, S.41
- Chain I: E.134, H.138
- Ligands: F1D.1
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.6: 2 residues within 4Å:- Chain A: S.121, K.122
Ligand excluded by PLIPSO4.8: 6 residues within 4Å:- Chain B: S.39, P.40, S.41
- Chain L: E.134, H.138
- Ligands: F1D.7
Ligand excluded by PLIPSO4.9: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.12: 2 residues within 4Å:- Chain B: S.121, K.122
Ligand excluded by PLIPSO4.14: 6 residues within 4Å:- Chain C: S.39, P.40, S.41
- Chain J: E.134, H.138
- Ligands: F1D.13
Ligand excluded by PLIPSO4.15: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.18: 2 residues within 4Å:- Chain C: S.121, K.122
Ligand excluded by PLIPSO4.20: 6 residues within 4Å:- Chain D: S.39, P.40, S.41
- Chain K: E.134, H.138
- Ligands: F1D.19
Ligand excluded by PLIPSO4.21: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain D: S.121, K.122
Ligand excluded by PLIPSO4.26: 6 residues within 4Å:- Chain A: E.134, H.138
- Chain E: S.39, P.40, S.41
- Ligands: F1D.25
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.30: 2 residues within 4Å:- Chain E: S.121, K.122
Ligand excluded by PLIPSO4.32: 6 residues within 4Å:- Chain D: E.134, H.138
- Chain F: S.39, P.40, S.41
- Ligands: F1D.31
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain F: S.121, K.122
Ligand excluded by PLIPSO4.38: 6 residues within 4Å:- Chain B: E.134, H.138
- Chain G: S.39, P.40, S.41
- Ligands: F1D.37
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain G: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.42: 2 residues within 4Å:- Chain G: S.121, K.122
Ligand excluded by PLIPSO4.44: 6 residues within 4Å:- Chain C: E.134, H.138
- Chain H: S.39, P.40, S.41
- Ligands: F1D.43
Ligand excluded by PLIPSO4.45: 4 residues within 4Å:- Chain H: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.48: 2 residues within 4Å:- Chain H: S.121, K.122
Ligand excluded by PLIPSO4.50: 6 residues within 4Å:- Chain E: E.134, H.138
- Chain I: S.39, P.40, S.41
- Ligands: F1D.49
Ligand excluded by PLIPSO4.51: 4 residues within 4Å:- Chain I: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.54: 2 residues within 4Å:- Chain I: S.121, K.122
Ligand excluded by PLIPSO4.56: 6 residues within 4Å:- Chain H: E.134, H.138
- Chain J: S.39, P.40, S.41
- Ligands: F1D.55
Ligand excluded by PLIPSO4.57: 4 residues within 4Å:- Chain J: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.60: 2 residues within 4Å:- Chain J: S.121, K.122
Ligand excluded by PLIPSO4.62: 6 residues within 4Å:- Chain F: E.134, H.138
- Chain K: S.39, P.40, S.41
- Ligands: F1D.61
Ligand excluded by PLIPSO4.63: 4 residues within 4Å:- Chain K: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.66: 2 residues within 4Å:- Chain K: S.121, K.122
Ligand excluded by PLIPSO4.68: 6 residues within 4Å:- Chain G: E.134, H.138
- Chain L: S.39, P.40, S.41
- Ligands: F1D.67
Ligand excluded by PLIPSO4.69: 4 residues within 4Å:- Chain L: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.72: 2 residues within 4Å:- Chain L: S.121, K.122
Ligand excluded by PLIPSO4.74: 4 residues within 4Å:- Chain M: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.75: 2 residues within 4Å:- Chain M: S.121, K.122
Ligand excluded by PLIPSO4.78: 4 residues within 4Å:- Chain N: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.79: 2 residues within 4Å:- Chain N: S.121, K.122
Ligand excluded by PLIPSO4.82: 4 residues within 4Å:- Chain O: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.83: 2 residues within 4Å:- Chain O: S.121, K.122
Ligand excluded by PLIPSO4.86: 4 residues within 4Å:- Chain P: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.87: 2 residues within 4Å:- Chain P: S.121, K.122
Ligand excluded by PLIPSO4.90: 4 residues within 4Å:- Chain Q: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.91: 2 residues within 4Å:- Chain Q: S.121, K.122
Ligand excluded by PLIPSO4.94: 4 residues within 4Å:- Chain R: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.95: 2 residues within 4Å:- Chain R: S.121, K.122
Ligand excluded by PLIPSO4.98: 4 residues within 4Å:- Chain S: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.99: 2 residues within 4Å:- Chain S: S.121, K.122
Ligand excluded by PLIPSO4.102: 4 residues within 4Å:- Chain T: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.103: 2 residues within 4Å:- Chain T: S.121, K.122
Ligand excluded by PLIPSO4.106: 4 residues within 4Å:- Chain U: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.107: 2 residues within 4Å:- Chain U: S.121, K.122
Ligand excluded by PLIPSO4.110: 4 residues within 4Å:- Chain V: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.111: 2 residues within 4Å:- Chain V: S.121, K.122
Ligand excluded by PLIPSO4.114: 4 residues within 4Å:- Chain W: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.115: 2 residues within 4Å:- Chain W: S.121, K.122
Ligand excluded by PLIPSO4.118: 4 residues within 4Å:- Chain X: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.119: 2 residues within 4Å:- Chain X: S.121, K.122
Ligand excluded by PLIP- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 5 residues within 4Å:- Chain A: H.108, L.109, P.111
- Chain R: N.80, H.82
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:N.80
PEG.10: 5 residues within 4Å:- Chain B: H.108, L.109, P.111
- Chain T: N.80, H.82
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:N.80
PEG.16: 5 residues within 4Å:- Chain C: H.108, L.109, P.111
- Chain S: N.80, H.82
1 PLIP interactions:1 interactions with chain S- Hydrogen bonds: S:N.80
PEG.22: 5 residues within 4Å:- Chain D: H.108, L.109, P.111
- Chain Q: N.80, H.82
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:N.80
PEG.28: 5 residues within 4Å:- Chain E: H.108, L.109, P.111
- Chain V: N.80, H.82
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:N.80
PEG.34: 5 residues within 4Å:- Chain F: H.108, L.109, P.111
- Chain X: N.80, H.82
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:N.80
PEG.40: 5 residues within 4Å:- Chain G: H.108, L.109, P.111
- Chain W: N.80, H.82
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:N.80
PEG.46: 5 residues within 4Å:- Chain H: H.108, L.109, P.111
- Chain U: N.80, H.82
1 PLIP interactions:1 interactions with chain U- Hydrogen bonds: U:N.80
PEG.52: 5 residues within 4Å:- Chain I: H.108, L.109, P.111
- Chain N: N.80, H.82
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:N.80
PEG.58: 5 residues within 4Å:- Chain J: H.108, L.109, P.111
- Chain P: N.80, H.82
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:N.80
PEG.64: 5 residues within 4Å:- Chain K: H.108, L.109, P.111
- Chain O: N.80, H.82
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:N.80
PEG.70: 5 residues within 4Å:- Chain L: H.108, L.109, P.111
- Chain M: N.80, H.82
1 PLIP interactions:1 interactions with chain M- Hydrogen bonds: M:N.80
- 24 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 7 residues within 4Å:- Chain A: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.11: 7 residues within 4Å:- Chain B: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.17: 7 residues within 4Å:- Chain C: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.23: 7 residues within 4Å:- Chain D: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.29: 7 residues within 4Å:- Chain E: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.35: 7 residues within 4Å:- Chain F: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.41: 7 residues within 4Å:- Chain G: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.47: 7 residues within 4Å:- Chain H: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.53: 7 residues within 4Å:- Chain I: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.59: 7 residues within 4Å:- Chain J: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.65: 7 residues within 4Å:- Chain K: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.71: 7 residues within 4Å:- Chain L: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.76: 7 residues within 4Å:- Chain M: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.80: 7 residues within 4Å:- Chain N: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.84: 7 residues within 4Å:- Chain O: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.88: 7 residues within 4Å:- Chain P: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.92: 7 residues within 4Å:- Chain Q: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.96: 7 residues within 4Å:- Chain R: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.100: 7 residues within 4Å:- Chain S: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.104: 7 residues within 4Å:- Chain T: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.108: 7 residues within 4Å:- Chain U: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.112: 7 residues within 4Å:- Chain V: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.116: 7 residues within 4Å:- Chain W: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIPPG4.120: 7 residues within 4Å:- Chain X: N.16, I.19, D.20, T.23, R.24, Q.27, W.124
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x F1D: methyl 4-(3-{(1R)-2-cyano-1-[(5-methyl-7-oxo-6,7-dihydro[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino]ethyl}phenoxy)piperidine-1-carboxylate(Non-covalent)
- 60 x SO4: SULFATE ION(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 24 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
BN
BO
BP
BQ
BR
BS
BT
BU
BV
BW
BX
B