- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x EXJ: (3R)-3-(3-chlorophenyl)-3-[(5-methyl-7-oxo-6,7-dihydro[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino]propanenitrile(Non-covalent)
- 21 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: S.121, K.122
- Chain B: H.104, R.107
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.4: 4 residues within 4Å:- Chain A: M.74, Y.98, L.102
- Ligands: EXJ.1
Ligand excluded by PLIPSO4.6: 7 residues within 4Å:- Chain B: S.39, P.40, S.41
- Chain F: E.134, R.137, H.138
- Ligands: EXJ.5
Ligand excluded by PLIPSO4.7: 4 residues within 4Å:- Chain B: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.8: 6 residues within 4Å:- Chain B: G.9, T.10, K.42, R.88
- Ligands: EXJ.5, DMS.9
Ligand excluded by PLIPSO4.10: 5 residues within 4Å:- Chain A: H.104, R.107
- Chain B: R.24, S.121, K.122
Ligand excluded by PLIPSO4.12: 4 residues within 4Å:- Chain C: S.121, K.122
- Chain D: H.104, R.107
Ligand excluded by PLIPSO4.13: 4 residues within 4Å:- Chain C: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.14: 4 residues within 4Å:- Chain C: M.74, Y.98, L.102
- Ligands: EXJ.11
Ligand excluded by PLIPSO4.16: 7 residues within 4Å:- Chain B: E.134, R.137, H.138
- Chain D: S.39, P.40, S.41
- Ligands: EXJ.15
Ligand excluded by PLIPSO4.17: 4 residues within 4Å:- Chain D: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.18: 6 residues within 4Å:- Chain D: G.9, T.10, K.42, R.88
- Ligands: EXJ.15, DMS.19
Ligand excluded by PLIPSO4.20: 5 residues within 4Å:- Chain C: H.104, R.107
- Chain D: R.24, S.121, K.122
Ligand excluded by PLIPSO4.22: 4 residues within 4Å:- Chain E: S.121, K.122
- Chain F: H.104, R.107
Ligand excluded by PLIPSO4.23: 4 residues within 4Å:- Chain E: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain E: M.74, Y.98, L.102
- Ligands: EXJ.21
Ligand excluded by PLIPSO4.26: 7 residues within 4Å:- Chain D: E.134, R.137, H.138
- Chain F: S.39, P.40, S.41
- Ligands: EXJ.25
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain F: H.18, R.91, S.128, S.129
Ligand excluded by PLIPSO4.28: 6 residues within 4Å:- Chain F: G.9, T.10, K.42, R.88
- Ligands: EXJ.25, DMS.29
Ligand excluded by PLIPSO4.30: 5 residues within 4Å:- Chain E: H.104, R.107
- Chain F: R.24, S.121, K.122
Ligand excluded by PLIP- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.9: 5 residues within 4Å:- Chain B: Y.7, P.8, R.88, G.89
- Ligands: SO4.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.89
- Salt bridges: B:E.99
DMS.19: 5 residues within 4Å:- Chain D: Y.7, P.8, R.88, G.89
- Ligands: SO4.18
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.89
- Salt bridges: D:E.99
DMS.29: 5 residues within 4Å:- Chain F: Y.7, P.8, R.88, G.89
- Ligands: SO4.28
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:G.89
- Salt bridges: F:E.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x EXJ: (3R)-3-(3-chlorophenyl)-3-[(5-methyl-7-oxo-6,7-dihydro[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino]propanenitrile(Non-covalent)
- 21 x SO4: SULFATE ION(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Skepper, C.K. et al., Discovery and Optimization of Phosphopantetheine Adenylyltransferase Inhibitors with Gram-Negative Antibacterial Activity. J. Med. Chem. (2018)
- Release Date
- 2018-04-04
- Peptides
- Phosphopantetheine adenylyltransferase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B