SMTL ID : 6dtw.1

HIV-1 Reverse Transcriptase Y181C Mutant in complex with JLJ 578

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

hetero-1-1-mer

Ligands

1 x H9Y: 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-6-fluoroindolizine-2-carbonitrile(Non-covalent)

H9Y.1: 16 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.190, G.192, F.229, W.231, L.236, H.237, P.238, Y.320 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:V.108, A:L.236 Hydrogen bonds: A:K.105, A:K.105 pi-Stacking: A:Y.190, A:W.231, A:W.231, A:W.231

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.445, G.446, E.480, D.500 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.500

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.333, G.335, Q.336 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.336 Salt bridges: A:K.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, T. et al., Molecular and cellular studies evaluating a potent 2-cyanoindolizine catechol diether NNRTI targeting wildtype and Y181C mutant HIV-1 reverse transcriptase. Bioorg.Med.Chem.Lett. (2019)

Release Date

2019-07-31

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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