- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x K5C: 4-({4-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}thieno[3,2-d]pyrimidin-2-yl)amino]piperidin-1-yl}methyl)benzene-1-sulfonamide(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: M.43, K.75, Y.148, P.152, Q.153
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.148, A:Q.153, A:Q.153
- Water bridges: A:K.75
- Salt bridges: A:K.75
SO4.4: 3 residues within 4Å:- Chain A: K.333, G.335, Q.336
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.336, A:Q.336
- Water bridges: A:K.333, A:K.333, A:D.366
- Salt bridges: A:K.333, A:K.514
SO4.5: 5 residues within 4Å:- Chain A: K.478, E.516, S.517, E.518, L.519
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.517, A:E.518, A:L.519
- Salt bridges: A:K.478
SO4.6: 7 residues within 4Å:- Chain A: W.428, Y.429, Q.430, L.527, I.528, K.530, E.531
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.430, A:Q.430, A:K.530
- Water bridges: A:V.533
SO4.7: 6 residues within 4Å:- Chain A: Q.502, W.537
- Chain B: Q.269, L.422, V.423, W.426
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.265, A:Q.502
- Water bridges: B:Q.269, B:Q.269, B:Q.269
SO4.23: 4 residues within 4Å:- Chain A: Q.87
- Chain B: P.55, Y.56, K.126
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.87, B:Y.56
- Water bridges: A:D.88
- Salt bridges: B:K.126
SO4.24: 9 residues within 4Å:- Chain A: T.405, E.406, Y.407, W.408
- Chain B: K.331, Q.332, G.333, K.424
- Ligands: EDO.16
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.406, B:Q.332
- Salt bridges: B:K.424
SO4.25: 4 residues within 4Å:- Chain B: I.274, K.275, V.276, R.277
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:V.276, B:R.277
- Salt bridges: A:K.542
- 28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 5 residues within 4Å:- Chain A: E.8, K.168
- Chain B: K.49, I.50
- Ligands: EDO.17
Ligand excluded by PLIPEDO.9: 3 residues within 4Å:- Chain A: K.168, P.172, W.214
Ligand excluded by PLIPEDO.10: 4 residues within 4Å:- Chain A: R.465, D.490, S.491, G.492
Ligand excluded by PLIPEDO.11: 4 residues within 4Å:- Chain A: R.450, T.475, N.476, Q.477
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: S.270, Y.341, G.354, K.355, K.376
Ligand excluded by PLIPEDO.13: 6 residues within 4Å:- Chain A: K.426, L.427, W.428, Y.429, Q.511, D.513
Ligand excluded by PLIPEDO.14: 7 residues within 4Å:- Chain A: L.488, S.491, G.492, L.493, Q.526, K.529, K.530
Ligand excluded by PLIPEDO.15: 4 residues within 4Å:- Chain A: W.90
- Chain B: K.20, V.21, K.22
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain A: E.406, Y.407, W.408, Q.509, Q.511
- Chain B: K.424
- Ligands: SO4.24
Ligand excluded by PLIPEDO.17: 6 residues within 4Å:- Chain A: E.8, V.10, S.164, S.165, K.168
- Ligands: EDO.8
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: W.428, D.513, K.514, I.528
Ligand excluded by PLIPEDO.19: 5 residues within 4Å:- Chain A: G.233, V.243, Q.244, P.245, W.268
Ligand excluded by PLIPEDO.20: 3 residues within 4Å:- Chain A: T.167, L.170, I.182
Ligand excluded by PLIPEDO.21: 4 residues within 4Å:- Chain A: T.9, D.123, E.124, D.125
Ligand excluded by PLIPEDO.26: 6 residues within 4Å:- Chain B: E.328, I.329, Q.330, P.392, V.417, P.421
Ligand excluded by PLIPEDO.27: 8 residues within 4Å:- Chain B: V.75, D.76, F.77, N.81, G.152, M.184, W.410, I.411
Ligand excluded by PLIPEDO.28: 3 residues within 4Å:- Chain B: Y.183, K.385, T.386
Ligand excluded by PLIPEDO.29: 4 residues within 4Å:- Chain B: W.24, E.399, W.402, T.403
Ligand excluded by PLIPEDO.30: 5 residues within 4Å:- Chain B: Q.242, Y.339, G.352, K.353, Y.354
Ligand excluded by PLIPEDO.31: 5 residues within 4Å:- Chain B: K.66, E.370, Q.373, K.374, Q.407
Ligand excluded by PLIPEDO.32: 1 residues within 4Å:- Chain B: K.395
Ligand excluded by PLIPEDO.33: 3 residues within 4Å:- Chain B: L.234, H.235, W.239
Ligand excluded by PLIPEDO.34: 6 residues within 4Å:- Chain A: T.379
- Chain B: W.24, P.25, E.399, T.400
- Ligands: DMS.22
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain B: Q.340, Y.342, P.345, F.346, N.348, Y.427
Ligand excluded by PLIPEDO.36: 2 residues within 4Å:- Chain B: E.42, K.43
Ligand excluded by PLIPEDO.37: 6 residues within 4Å:- Chain A: E.434, P.435
- Chain B: T.253, N.255, D.256, K.259
Ligand excluded by PLIPEDO.38: 3 residues within 4Å:- Chain B: K.20, V.21, K.22
Ligand excluded by PLIPEDO.39: 5 residues within 4Å:- Chain A: W.404, T.405
- Chain B: K.331, G.333, Q.334
Ligand excluded by PLIP- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Y. et al., Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors. Elife (2018)
- Release Date
- 2018-08-01
- Peptides
- p66 RT: A
p51 RT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 6duh.1
Crystal structure of HIV-1 reverse transcriptase Y181I mutant in complex with non-nucleoside inhibitor 25a
p66 RT
p51 RT
Related Entries With Identical Sequence
2ykm.1 | 2ykn.1 | 2zd1.1 | 2ze2.1 | 3bgr.1 | 3ig1.1 | 3irx.1 | 3is9.1 | 3qo9.1 | 3v4i.1 | 3v4i.2 | 3v6d.1 | 3v6d.2 | 3v81.1 | 3v81.2 | 4g1q.1 | 4h4m.1 | 4h4o.1 | 4i2p.1 | 4i2q.1 | 4kko.1 | 4ko0.1 | 4lsl.1 | 4lsn.1 | 4mfb.1 | 4o44.1 | 4o4g.1 | 4pqu.1 | 4pqu.2 | 4puo.1 more...less...4puo.2 | 4pwd.1 | 4pwd.2 | 4q0b.1 | 4q0b.2 | 4r5p.1 | 4r5p.2 | 4rw4.1 | 4rw6.1 | 4rw7.1 | 4rw8.1 | 4rw9.1 | 4we1.1 | 5c25.1 | 5c42.1 | 5cym.1 | 5cyq.1 | 5ter.1 | 5tw3.1 | 5txm.1 | 5txm.2 | 5txn.1 | 5txn.2 | 5txo.1 | 5txo.2 | 5txp.1 | 5txp.2 | 5vqq.1 | 5vqr.1 | 5vqs.1 | 5vqt.1 | 5vqu.1 | 5vqv.1 | 5vqw.1 | 5vqx.1 | 5vqy.1 | 5vqz.1 | 6c0j.1 | 6c0k.1 | 6c0n.1 | 6c0o.1 | 6c0r.1 | 6cgf.1 | 6dtw.1 | 6dtx.1 | 6duf.1 | 6dug.1 | 6eli.1 | 6oe3.1 | 6x47.1 | 6x49.1 | 6x4a.1 | 6x4b.1 | 6x4c.1 | 6x4d.1 | 6x4e.1 | 6x4f.1 | 7ahx.1 | 7ahx.2 | 7aid.1 | 7aid.2 | 7aif.1 | 7aif.2 | 7aig.1 | 7aig.2 | 7aii.1 | 7aii.2 | 7aij.1 | 7aij.2 | 7krc.1 | 7krd.1 | 7kre.1 | 7krf.1 | 7ot6.1 | 7ot6.2 | 7ota.1 | 7ota.2 | 7otk.1 | 7otk.2 | 7otn.1 | 7otn.2 | 7otx.1 | 7otx.2 | 7otz.1 | 7otz.2 | 7out.1 | 7out.2 | 7ozw.1 | 7p15.1 | 7snp.1 | 7snz.1 | 7so1.1 | 7so2.1 | 7so3.1 | 7so4.1 | 7so6.1 | 7u5z.1 | 7z24.1 | 7z2d.1 | 7z2g.1 | 8dx2.1 | 8dx3.1 | 8dx8.1 | 8dxb.1 | 8dxe.1 | 8dxg.1 | 8dxh.1 | 8dxi.1 | 8dxj.1 | 8dxk.1 | 8dxl.1 | 8dxm.1 | 8ffx.1 | 8stp.1 | 8stq.1 | 8str.1 | 8sts.1 | 8sts.2 | 8stt.1 | 8stt.2 | 8stu.1 | 8stv.1 | 8stv.2 | 8u69.1 | 8u6a.1 | 8u6b.1 | 8u6c.1 | 8u6d.1 | 8u6e.1 | 8u6f.1 | 8u6g.1 | 8u6h.1 | 8u6h.2 | 8u6i.1 | 8u6j.1 | 8u6k.1 | 8u6l.1 | 8u6m.1 | 8u6n.1 | 8u6o.1 | 8u6p.1 | 8u6q.1 | 8u6r.1 | 8u6s.1 | 8u6t.1 | 8vu9.1 | 8vub.1 | 8vum.1