SMTL ID : 6fi3.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: T.194, R.195, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196, A:W.196 DMS.2: 5 residues within 4Å: Chain A: H.303, K.304, R.305, E.307, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.3: 3 residues within 4Å: Chain A: R.19, S.33, Y.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.19

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: Y.191, R.195, R.198, Y.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.195, A:R.198 Salt bridges: A:R.195, A:R.198

1 x DJ2: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(azanyloxymethyl)oxolane-3,4-diol(Non-covalent)

DJ2.5: 12 residues within 4Å: Chain A: I.35, G.36, E.37, V.43, A.56, Q.109, D.110, L.111, M.112, D.115, K.118, L.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.110, A:M.112, A:D.115, A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., Crystal structure of ERK2 in complex with an adenosine derivative. To be published

Release Date

2019-01-30

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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