SMTL ID : 6fma.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.2: 3 residues within 4Å: Chain A: T.194, R.195, W.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196 DMS.3: 3 residues within 4Å: Chain A: D.128, H.129, Y.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.128 pi-Cation interactions: A:H.129 DMS.4: 2 residues within 4Å: Chain A: T.122, N.228 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: Y.191, R.195, R.198, H.236, Y.237 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.191 Water bridges: A:Y.191, A:R.195, A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198

1 x DU8: 3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanylpropanoic acid(Non-covalent)

DU8.6: 15 residues within 4Å: Chain A: I.35, G.36, E.37, G.38, A.39, Y.40, V.43, A.56, K.58, D.110, L.111, M.112, D.115, K.118, L.160 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.39, A:D.110, A:M.112, A:D.115, A:D.115, A:K.118 Water bridges: A:S.157, A:N.158 Salt bridges: A:K.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-13

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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