SMTL ID : 6fr1.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: K.142, H.145, S.146, K.211, V.308, E.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.211 Salt bridges: A:E.309 DMS.2: 3 residues within 4Å: Chain A: T.194, R.195, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196, A:W.196 DMS.3: 3 residues within 4Å: Chain A: T.122, H.124, N.228 No protein-ligand interaction detected (PLIP) DMS.4: 2 residues within 4Å: Chain A: I.260, R.265 No protein-ligand interaction detected (PLIP) DMS.5: 5 residues within 4Å: Chain A: H.303, K.304, R.305, E.307, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: Y.191, R.195, R.198, Y.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.191 Water bridges: A:R.198, A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198 SO4.7: 2 residues within 4Å: Chain A: R.71, R.176 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.71, A:R.176

1 x E3K: azanylidene-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-[2-oxidanylidene-2-(2-sulfanylethylamino)ethyl]sulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino]azanium(Non-covalent)

E3K.8: 16 residues within 4Å: Chain A: I.35, G.36, E.37, V.43, A.56, I.57, K.58, I.107, Q.109, D.110, L.111, M.112, D.115, K.118, L.160, C.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.58, A:Q.109, A:D.110, A:M.112, A:K.118 Water bridges: A:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-13

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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