SMTL ID : 6kay.1

X-ray structure of human PPARalpha ligand binding domain-GW7647 co-crystals obtained by soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x 2VN: 2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid(Non-covalent)

2VN.1: 28 residues within 4Å: Chain A: I.46, L.52, E.56, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, T.88, Y.119, I.122, F.123, M.125, L.126, M.135, V.137, A.138, I.144, I.159, M.160, H.245, V.249, L.261, L.265, Y.269 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.52, A:F.78, A:Q.82, A:T.84, A:T.88, A:I.122, A:L.126, A:V.137, A:I.144, A:I.159, A:L.261 Hydrogen bonds: A:T.84, A:S.85, A:Y.119, A:Y.269 Water bridges: A:T.84, A:T.88 Salt bridges: A:H.245

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: K.27, A.30, R.31, L.34, S.127, S.128, M.130, N.131, N.171 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.27, A:R.31, A:M.130 Water bridges: A:K.27, A:N.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

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