SMTL ID : 6kb2.1

X-ray structure of human PPARalpha ligand binding domain-Wy14643 co-crystals obtained by soaking

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x WY1: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID(Non-covalent)

WY1.1: 18 residues within 4Å: Chain A: F.78, C.81, Q.82, T.84, S.85, T.88, Y.119, I.122, F.123, L.126, M.135, I.159, M.160, K.163, H.245, V.249, L.265, Y.269 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.84, A:I.122, A:L.126 Hydrogen bonds: A:S.85, A:S.85, A:S.85, A:Y.119, A:Y.269 Salt bridges: A:H.245 WY1.2: 15 residues within 4Å: Chain A: I.46, L.52, E.56, L.59, V.60, L.63, I.68, K.71, R.76, I.77, H.79, C.80, C.83, V.137, I.144 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:E.56, A:V.60, A:I.77 Hydrogen bonds: A:E.56, A:E.56 Salt bridges: A:K.71, A:H.79 Halogen bonds: A:C.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor alpha

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