SMTL ID : 9rcg.1

Vitamin D receptor complex with a vitamin D receptor agonist/histone deacetylase inhibitor hybrid molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: 4-[4-[3-[5-[(3~{S})-4,4-dimethyl-3-oxidanyl-pentyl]-4-methyl-1,3-thiazol-2-yl]pentan-3-yl]phenoxy]-~{N}-oxidanyl-butanamide

01.1: 26 residues within 4Å: Chain A: T.23, Y.24, D.25, Y.28, L.104, L.107, A.108, L.110, V.111, Y.113, S.114, K.117, I.145, I.148, M.149, R.151, S.152, W.163, Y.172, V.177, A.180, H.182, H.272, Y.276, L.279, L.289 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.104, A:L.110, A:V.111, A:I.145, A:I.148, A:W.163, A:W.163, A:W.163, A:Y.172, A:V.177, A:A.180, A:Y.276, A:L.279, A:L.289 Hydrogen bonds: A:D.25, A:S.114, A:R.151, A:R.151 Water bridges: A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarmadi, F. et al., Hyperagonism of a Vitamin D Receptor Agonist/Histone Deacetylase Inhibitor Hybrid Molecule. J.Med.Chem. (2025)

Release Date

2025-10-01

Peptides

Vitamin D3 receptor A: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vitamin D3 receptor A

Nuclear receptor coactivator 2

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