SMTL ID : 6yyx.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 3-methyl-2-oxoglutarate, and factor X substrate peptide fragment(39mer-4Ser)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.350, R.359, D.392, H.396 Chain B: D.18 Ligands: Q1Z.2 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.18, A:H.350, A:H.396, H2O.18

1 x Q1Z: (3~{R})-3-methyl-2-oxidanylidene-pentanedioic acid(Non-covalent)

Q1Z.2: 19 residues within 4Å: Chain A: W.296, Q.298, S.339, M.341, V.347, H.350, R.359, H.361, I.373, W.382, F.390, D.392, H.396, V.398, R.406, I.408, I.410 Chain B: D.18 Ligands: MN.1 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.347, A:V.398, A:I.410 Hydrogen bonds: A:W.296, A:S.339, A:S.339, B:D.18 Water bridges: A:D.392 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brewitz, L. et al., Synthesis of 2-oxoglutarate derivatives and their evaluation as cosubstrates and inhibitors of human aspartate/asparagine-beta-hydroxylase. Chem Sci (2021)

Release Date

2021-03-17

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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