SMTL ID : 6z6r.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, N-oxalyl-alpha-methylalanine, and factor X substrate peptide fragment(39mer-4Ser)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.350, H.396 Chain B: D.18 Ligands: UQK.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, H2O.1

1 x BR: BROMIDE ION(Non-covalent)

BR.2: 3 residues within 4Å: Chain A: Y.42, P.43, Q.44 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: K.91, L.120, F.121, P.122, N.123, D.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.91, A:N.123

1 x UQK: N-oxalyl-alpha-methylalanine(Non-covalent)

UQK.4: 18 residues within 4Å: Chain A: W.296, Q.298, S.339, M.341, V.347, H.350, R.359, H.361, I.373, W.382, F.390, D.392, H.396, V.398, R.406, I.408, I.410 Ligands: MN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.296, A:W.382 Hydrogen bonds: A:W.296, A:S.339, A:H.361 Water bridges: A:R.359 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brewitz, L. et al., Synthesis of 2-oxoglutarate derivatives and their evaluation as cosubstrates and inhibitors of human aspartate/asparagine-beta-hydroxylase. Chem Sci (2020)

Release Date

2021-03-17

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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