SMTL ID : 7b7u.1

Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.88, C.90, C.94, C.97 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.88, C:C.90, C:C.94, C:C.97 ZN.2: 5 residues within 4Å: Chain G: C.17, C.20, C.39, N.41, C.42 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.17, G:C.20, G:C.39 ZN.3: 3 residues within 4Å: Chain G: A.116, C.119, G.120 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:C.119 ZN.4: 4 residues within 4Å: Chain H: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.44, H:C.45 ZN.5: 5 residues within 4Å: Chain J: C.19, C.22, T.24, C.36, C.39 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.19, J:C.22, J:C.36, J:C.39 ZN.6: 5 residues within 4Å: Chain K: C.100, C.105, K.107, C.136, C.140 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.100, K:C.105, K:C.136, K:C.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fianu, I. et al., Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Commun Biol (2021)

Release Date

2021-05-19

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit E: D
DNA-directed RNA polymerase II subunit F: E
DNA-directed RNA polymerases I, II, and III subunit RPABC3: F
DNA-directed RNA polymerase II subunit RPB9: G
Uncharacterized Protein: H
RNA_pol_L_2 domain-containing protein: I
RNA polymerase II subunit K: J
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2: K
Unknown: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
I

H
J

I
K

J
L

K
M

L
N

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit E

DNA-directed RNA polymerase II subunit F

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

Uncharacterized Protein

RNA_pol_L_2 domain-containing protein

RNA polymerase II subunit K

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2

Unknown

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