SMTL ID : 7bq3.1

X-ray structure of human PPARalpha ligand binding domain-GW7647-SRC1 coactivator peptide co-crystals obtained by delipidation and co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 2VN: 2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid(Non-covalent)

2VN.1: 29 residues within 4Å: Chain A: M.25, I.46, L.52, A.55, E.56, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, T.88, Y.119, I.122, M.125, L.126, M.135, V.137, A.138, I.144, I.159, M.160, H.245, V.249, L.261, L.265, Y.269 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.46, A:L.52, A:V.60, A:F.78, A:Q.82, A:T.84, A:L.126, A:V.137, A:I.144, A:I.159 Hydrogen bonds: A:S.85 Water bridges: A:T.88 Salt bridges: A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates. Iscience (2020)

Release Date

2020-11-11

Peptides

Peroxisome proliferator-activated receptor alpha: A
15-meric peptide from Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor alpha

15-meric peptide from Nuclear receptor coactivator 1

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