SMTL ID : 7fsv.3 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1454310449

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x UQS: N-[(2-fluorophenyl)methyl]-1H-pyrazol-4-amine(Non-covalent)

UQS.1: 11 residues within 4Å: Chain A: N.112, G.113, N.134, I.135, V.143, G.145, L.146, I.151, F.172, I.176, M.184 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.176 Hydrogen bonds: A:N.134, A:I.135, A:V.143, A:G.145 Halogen bonds: A:N.112

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:G.140 EDO.3: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.174 EDO.4: 3 residues within 4Å: Chain A: P.91, F.92, P.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.91 Water bridges: A:R.94

1 x GLY: GLYCINE(Non-covalent)

GLY.5: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 8 PLIP interactions: 2 Ligand-Ligand interactions, 6 interactions with chain A Hydrogen bonds: G.5, G.5, A:S.68, A:R.178 Water bridges: A:K.27, A:S.28 Salt bridges: A:K.27, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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