SMTL ID : 7ft2.3 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z235449082

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x JFS: [4-(1H-benzimidazol-1-yl)phenyl]methanol(Non-covalent)

JFS.1: 6 residues within 4Å: Chain A: R.25, L.37, M.179, A.180, I.183, L.187 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.37, A:I.183, A:L.187 Hydrogen bonds: A:A.180 pi-Cation interactions: A:R.25, A:R.25

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.50, G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:H.190 Water bridges: A:R.50, A:R.50 EDO.3: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.174 Water bridges: A:D.30, A:D.30, A:D.30

1 x GLY: GLYCINE(Non-covalent)

GLY.4: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.28, A:S.68 Water bridges: A:K.27, A:K.27, A:D.69, A:R.178 Salt bridges: A:K.27, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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