SMTL ID : 8blu.3 (3 other biounits)

The PDZ domains of human SDCBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:E.137 EDO.2: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.30, A:H.174 Water bridges: A:D.30 EDO.3: 3 residues within 4Å: Chain A: D.69, H.72, K.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.69, A:K.73

3 x GLY: GLYCINE(Non-covalent)

GLY.4: 4 residues within 4Å: Chain A: H.99, S.123, R.126, N.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.127 Salt bridges: A:H.99, A:R.126 GLY.5: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:K.27, A:S.68, G.5, G.5 Water bridges: A:K.27, A:S.28, A:D.69 Salt bridges: A:K.27, A:R.178 GLY.6: 4 residues within 4Å: Chain A: H.105, V.106, G.107, F.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.106, A:G.107, A:F.108, A:F.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., The PDZ domains of human SDCBP. To Be Published

Release Date

2022-11-30

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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