SMTL ID : 7ft3.3 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z291279160

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x LV4: 1-[2-(trifluoromethyloxy)phenyl]thiourea(Non-covalent)

LV4.1: 3 residues within 4Å: Chain A: N.31, A.64, G.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.31 LV4.2: 6 residues within 4Å: Chain A: S.117, I.118, V.119, K.120, A.125, T.131 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.120 Hydrogen bonds: A:I.118, A:I.118

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: G.140, Q.141, N.142, D.189, H.190, T.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 EDO.4: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.174 EDO.5: 2 residues within 4Å: Chain A: P.91, F.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.91 Water bridges: A:R.94

1 x GLY: GLYCINE(Non-covalent)

GLY.6: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.28, A:S.28, A:S.28, A:S.68 Water bridges: A:K.27 Salt bridges: A:K.27, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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