SMTL ID : 7ft9.3 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z45636695

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x 4MB: 4-[(METHYLSULFONYL)AMINO]BENZOIC ACID(Non-covalent)

4MB.1: 9 residues within 4Å: Chain A: K.100, G.104, V.106, F.108, I.109, F.110, A.152, L.155, S.156 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.110, A:A.152 Hydrogen bonds: A:F.110 Water bridges: A:F.108, A:F.108

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.50, G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:E.137 EDO.3: 4 residues within 4Å: Chain A: P.91, F.92, R.94, P.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.91, A:R.94

1 x GLY: GLYCINE(Non-covalent)

GLY.4: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 11 PLIP interactions: 9 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:S.28, A:S.68, A:R.178, G.4, G.4 Water bridges: A:K.27, A:K.27, A:D.69, A:D.69 Salt bridges: A:K.27, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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