SMTL ID : 7ft5.3 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with POB0093

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x YEF: 4-(4-methoxyphenyl)oxane-4-carboxylic acid(Non-covalent)

YEF.1: 10 residues within 4Å: Chain A: K.100, G.104, H.105, V.106, G.107, F.108, I.109, F.110, L.155, S.156 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.110, A:L.155 Hydrogen bonds: A:K.100, A:V.106, A:G.107, A:F.110 Salt bridges: A:H.105

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:E.137 EDO.3: 4 residues within 4Å: Chain A: D.30, F.170, I.171, H.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.30, A:F.170, A:H.174 Water bridges: A:D.30 EDO.4: 2 residues within 4Å: Chain A: P.91, F.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.91, A:R.94

1 x GLY: GLYCINE(Non-covalent)

GLY.5: 5 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, R.178 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.28, A:S.68 Water bridges: A:D.69 Salt bridges: A:K.27, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Syntenin-1

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