SMTL ID : 7ft7.2 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z57127349

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x SZB: succinimide(Non-covalent)

SZB.1: 4 residues within 4Å: Chain A: F.108, I.109, F.110, D.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.110, A:F.110 Water bridges: A:D.148

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.30, A:H.174 Water bridges: A:D.30 EDO.3: 7 residues within 4Å: Chain A: R.50, G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:E.137

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: S.28, N.31, G.65, W.66, S.67 Ligands: DGL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.28, A:N.31 Water bridges: A:N.31, A:G.65, A:S.67

1 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.5: 7 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, H.174, R.178 Ligands: SO4.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.28, A:S.68 Water bridges: A:K.27, A:K.27, A:D.69 Salt bridges: A:K.27, A:K.27, A:H.174, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Syntenin-1

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