SMTL ID : 7fsx.2 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1328078283

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x I8A: N-(cyclopropylmethyl)-2,2,3,3-tetramethylazetidine-1-carboxamide(Non-covalent)

I8A.1: 10 residues within 4Å: Chain A: G.20, K.21, I.22, G.23, L.24, R.25, L.37, Q.39, L.75, K.76 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.22, A:R.25, A:L.37, A:Q.39, A:L.75, A:K.76 Hydrogen bonds: A:I.22, A:G.23, A:L.24

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.30, F.170, I.171, H.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.30, A:H.174 Water bridges: A:D.30 EDO.3: 6 residues within 4Å: Chain A: G.140, Q.141, N.142, D.189, H.190, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.142, A:D.189 Water bridges: A:R.50, A:E.137

1 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.4: 6 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, H.174, R.178 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.28, A:S.68 Water bridges: A:K.27, A:K.27, A:D.30, A:D.69 Salt bridges: A:K.27, A:K.27, A:H.174, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Syntenin-1

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