SMTL ID : 7ftb.2 (3 other biounits)

SDCBP PanDDA analysis group deposition -- The PDZ domans of SDCBP in complex with Z1198269757

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x YEZ: [1]benzofuro[2,3-d]pyridazin-4(3H)-one(Non-covalent)

YEZ.1: 6 residues within 4Å: Chain A: Q.141, L.146, Q.150, D.153, I.154, H.190 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.150, A:D.153, A:I.154, A:I.154 Hydrogen bonds: A:Q.141

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.29, D.30, F.170, I.171, H.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.30, A:H.174 EDO.3: 8 residues within 4Å: Chain A: R.50, E.137, G.140, Q.141, N.142, D.189, H.190, T.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.142, A:H.190

1 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.4: 6 residues within 4Å: Chain A: K.27, S.28, S.67, S.68, H.174, R.178 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.28, A:S.28, A:S.68 Water bridges: A:K.27, A:K.27, A:D.30, A:D.69 Salt bridges: A:K.27, A:K.27, A:H.174, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., SDCBP PanDDA analysis group deposition. To Be Published

Release Date

2023-02-15

Peptides

Syntenin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Syntenin-1

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