SMTL ID : 7g81.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z104474512

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

hetero-1-1-mer

Ligands

2 x H04: 1-(2-ethoxyphenyl)piperazine(Non-covalent)

H04.1: 5 residues within 4Å: Chain A: R.71, P.102, E.103, H.106, F.107 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.106, A:F.107 H04.2: 6 residues within 4Å: Chain A: A.4, D.46, I.47, E.48, Q.53, V.54 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.4, A:D.46, A:Q.53, A:Q.53

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.10: 4 residues within 4Å: Chain B: Q.100, A.101, L.102, C.103 No protein-ligand interaction detected (PLIP) DMS.11: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:Q.33, B:H.203 DMS.12: 5 residues within 4Å: Chain B: Y.153, A.154, D.156, K.157, Q.160 No protein-ligand interaction detected (PLIP)

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 2 residues within 4Å: Chain A: R.146, N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:R.146, A:N.150 FMT.5: 3 residues within 4Å: Chain A: V.36, P.37 Chain B: R.197 No protein-ligand interaction detected (PLIP) FMT.6: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.44, B:R.174 FMT.7: 3 residues within 4Å: Chain A: P.109, N.110, V.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.110 FMT.8: 3 residues within 4Å: Chain A: H.106, F.107, P.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.107 FMT.9: 4 residues within 4Å: Chain A: P.72, L.73, P.76, F.107 No protein-ligand interaction detected (PLIP) FMT.13: 4 residues within 4Å: Chain B: H.113, R.114, I.205 Ligands: FMT.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113 FMT.14: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.97, B:H.113, B:R.114 FMT.15: 4 residues within 4Å: Chain B: P.192, L.193, S.196, K.220 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 Water bridges: B:S.196 FMT.16: 4 residues within 4Å: Chain B: I.120, S.124, T.214, L.218 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.124, B:S.124 FMT.17: 2 residues within 4Å: Chain B: K.144, L.233 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.234 FMT.18: 1 residues within 4Å: Ligands: FMT.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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