SMTL ID : 7g8n.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1262549981

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z1L: 1-anilinocyclopropane-1-carboxylic acid(Non-covalent)

Z1L.1: 6 residues within 4Å: Chain A: V.49, D.50, K.52, R.177, L.180, Q.181 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.49, A:D.50, A:R.177, A:L.180 Hydrogen bonds: A:D.50, A:D.50, A:D.50 Salt bridges: A:K.52

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.7: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.8: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.204

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.43, A:V.44 FMT.5: 4 residues within 4Å: Chain A: E.65, R.71, K.99, W.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.71 FMT.6: 5 residues within 4Å: Chain A: P.72, P.76, F.107 Chain B: S.143, Q.232 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.9: 4 residues within 4Å: Chain B: H.113, R.114, I.205 Ligands: FMT.15 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113 FMT.10: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.11: 2 residues within 4Å: Chain A: P.37 Chain B: R.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.37 FMT.12: 4 residues within 4Å: Chain B: P.192, S.196, L.216, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.13: 3 residues within 4Å: Chain B: C.79, E.82, K.133 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82 FMT.14: 4 residues within 4Å: Chain B: R.141, K.144, L.233, E.234 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.141 FMT.15: 2 residues within 4Å: Chain B: H.113 Ligands: FMT.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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