SMTL ID : 7g8w.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1416193393

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z6I: 4-(5-methyl-1H-pyrazol-4-yl)piperidine(Non-covalent)

Z6I.1: 6 residues within 4Å: Chain A: D.68, P.72, P.102, E.103, H.106, F.107 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.107, A:F.107 Water bridges: A:D.68 pi-Stacking: A:F.107

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.146 DMS.8: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.9: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:H.203, B:I.205 DMS.10: 6 residues within 4Å: Chain B: Y.153, A.154, R.155, D.156, K.157, Q.160 No protein-ligand interaction detected (PLIP) DMS.11: 4 residues within 4Å: Chain B: L.23, H.26, K.28, M.31 No protein-ligand interaction detected (PLIP)

13 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:N.150 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.174, A:V.44 FMT.5: 3 residues within 4Å: Chain A: K.99, W.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.103 Water bridges: A:D.14 FMT.6: 2 residues within 4Å: Chain A: H.106, F.107 No protein-ligand interaction detected (PLIP) FMT.7: 5 residues within 4Å: Chain A: P.72, L.73, P.76, F.107 Chain B: S.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.12: 3 residues within 4Å: Chain B: H.113, R.114, I.205 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.114 Water bridges: B:H.113 FMT.13: 4 residues within 4Å: Chain B: R.97, I.112, H.113, R.114 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.97, B:V.111, B:H.113, B:R.114 FMT.14: 1 residues within 4Å: Chain B: R.197 No protein-ligand interaction detected (PLIP) FMT.15: 3 residues within 4Å: Chain B: P.192, S.196, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.220 Water bridges: B:S.196 FMT.16: 5 residues within 4Å: Chain B: C.79, E.82, K.133, T.134, E.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.82 Water bridges: B:E.137 FMT.17: 1 residues within 4Å: Chain B: S.124 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.124 FMT.18: 2 residues within 4Å: Chain B: K.144, L.233 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.234 FMT.19: 1 residues within 4Å: Chain B: H.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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