SMTL ID : 7g90.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1509195674

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZA9: 4-[(3S)-piperidin-3-yl]-1H-indole(Non-covalent)

ZA9.1: 6 residues within 4Å: Chain A: D.68, P.72, P.102, E.103, H.106, F.107 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.72 Hydrogen bonds: A:D.68, A:P.102 pi-Stacking: A:F.107, A:F.107

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.7: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.8: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.204 Water bridges: B:I.205 DMS.9: 5 residues within 4Å: Chain B: A.154, R.155, D.156, K.157, Q.160 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.160 DMS.10: 3 residues within 4Å: Chain B: L.23, H.26, K.28 No protein-ligand interaction detected (PLIP)

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.146 Water bridges: A:D.147, A:N.150 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.174, A:V.44 FMT.5: 2 residues within 4Å: Chain A: K.99, W.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.100 Water bridges: A:R.71 FMT.6: 4 residues within 4Å: Chain A: P.72, L.73, F.107 Chain B: S.143 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:S.143 FMT.11: 4 residues within 4Å: Chain B: H.113, R.114, I.205 Ligands: FMT.17 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.114 FMT.12: 6 residues within 4Å: Chain B: R.97, A.101, V.111, I.112, H.113, R.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.111, B:H.113, B:R.114 FMT.13: 4 residues within 4Å: Chain B: P.192, L.193, S.196, K.220 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.220 FMT.14: 5 residues within 4Å: Chain B: C.79, E.82, K.133, T.134, E.137 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.82 FMT.15: 1 residues within 4Å: Chain B: T.214 No protein-ligand interaction detected (PLIP) FMT.16: 4 residues within 4Å: Chain B: R.141, K.144, L.233, E.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.141, B:E.234 FMT.17: 2 residues within 4Å: Chain B: H.113 Ligands: FMT.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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