SMTL ID : 7g91.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with Z1509257513

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZBH: (4S)-N,2-dimethyl-4,5,6,7-tetrahydro-1,3-benzothiazole-4-carboxamide(Non-covalent)

ZBH.1: 6 residues within 4Å: Chain A: T.20, P.37, T.38 Chain B: L.193, R.197, Q.200 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.20, B:R.197

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.8: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.9: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.203, B:G.204 Water bridges: B:I.205

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.146 FMT.4: 3 residues within 4Å: Chain A: Y.43, V.44 Chain B: R.174 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.174, A:V.44 FMT.5: 5 residues within 4Å: Chain A: E.65, R.71, K.99, W.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.71, A:K.99 FMT.6: 2 residues within 4Å: Chain A: H.106, F.107 No protein-ligand interaction detected (PLIP) FMT.7: 3 residues within 4Å: Chain A: P.72, P.76, F.107 No protein-ligand interaction detected (PLIP) FMT.10: 3 residues within 4Å: Chain B: H.113, R.114, I.205 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.114 FMT.11: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.12: 1 residues within 4Å: Chain B: G.105 No protein-ligand interaction detected (PLIP) FMT.13: 4 residues within 4Å: Chain B: P.192, S.196, L.216, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.14: 3 residues within 4Å: Chain B: C.79, E.82, K.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.82, B:K.133 FMT.15: 3 residues within 4Å: Chain B: K.144, L.233, E.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.234 Water bridges: B:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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