SMTL ID : 7g9h.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with PCM-0102245-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: R.146, Y.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.7: 6 residues within 4Å: Chain B: V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.203, B:G.204

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.3: 2 residues within 4Å: Chain A: P.37 Chain B: R.197 No protein-ligand interaction detected (PLIP) FMT.4: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.44, B:R.174 FMT.5: 5 residues within 4Å: Chain A: E.65, R.71, K.99, W.100, E.103 No protein-ligand interaction detected (PLIP) FMT.8: 1 residues within 4Å: Chain B: K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.192, B:K.220 FMT.9: 4 residues within 4Å: Chain B: C.79, E.82, K.133, T.134 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.130, B:K.133 Water bridges: B:C.79 FMT.10: 4 residues within 4Å: Chain A: P.72, F.107 Chain B: S.143, Q.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.143

1 x KLU: (2S)-4-(chloroacetyl)-3,4-dihydro-2H-1,4-benzoxazine-2-carboxamide(Covalent)

KLU.6: 7 residues within 4Å: Chain B: S.21, F.22, Q.25, C.103, P.104, S.106, N.109 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.25, B:Q.25, B:S.106, B:N.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

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