SMTL ID : 7g9i.1

ARHGEF2 PanDDA analysis group deposition -- ARHGEF2 and RhoA in complex with PCM-0102253-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZGQ: N-[(2-methylphenyl)methyl]acetamide(Covalent)

ZGQ.1: 6 residues within 4Å: Chain A: C.21, V.25, F.31, K.119, A.162, K.163 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.25, A:F.31, A:F.31, A:K.163 Water bridges: A:K.163, A:K.163

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: R.146, Y.157, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146 Salt bridges: A:E.159 DMS.9: 3 residues within 4Å: Chain B: Q.100, A.101, L.102 No protein-ligand interaction detected (PLIP) DMS.10: 7 residues within 4Å: Chain B: E.29, V.30, Q.33, H.201, S.202, H.203, G.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.203, B:G.204 DMS.11: 3 residues within 4Å: Chain B: H.26, K.28, M.31 No protein-ligand interaction detected (PLIP)

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.146, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.146, A:N.150 FMT.4: 4 residues within 4Å: Chain A: C.21, V.36, P.37, T.38 No protein-ligand interaction detected (PLIP) FMT.5: 4 residues within 4Å: Chain A: Y.43, V.44 Chain B: K.173, R.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.44 Water bridges: A:Y.43 FMT.6: 3 residues within 4Å: Chain A: R.71, K.99, W.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.71 Water bridges: A:D.14 FMT.7: 6 residues within 4Å: Chain A: P.72, L.73, P.76, F.107 Chain B: S.143, Q.232 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.143, B:Q.232 FMT.8: 3 residues within 4Å: Chain A: F.26, A.45, D.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.26, A:D.46 Water bridges: A:Y.43 FMT.12: 5 residues within 4Å: Chain B: R.97, V.111, I.112, H.113, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:R.114 FMT.13: 3 residues within 4Å: Chain B: P.192, L.193, K.220 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.196, B:K.220 FMT.14: 4 residues within 4Å: Chain B: C.79, E.82, K.133, T.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.133 FMT.15: 3 residues within 4Å: Chain B: K.144, L.233, E.234 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.234, B:E.234, B:A.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., ARHGEF2 PanDDA analysis group deposition. To Be Published

Release Date

2023-07-12

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transforming protein RhoA

Rho guanine nucleotide exchange factor 2

Related Entries With Identical Sequence