SMTL ID : 8a34.1

MTH1 in complex with TH013071

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x KYI: 5-(2-phenylphenyl)-1H-pyrimidine-2,4-dione(Non-covalent)

KYI.1: 15 residues within 4Å: Chain A: Y.10, T.11, L.12, F.30, N.36, G.40, F.75, F.77, M.84, V.86, W.120, D.122, D.123, W.126 Ligands: ACT.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.10, A:F.30, A:F.77, A:V.86, A:V.86, A:W.120, A:W.120 Hydrogen bonds: A:N.36, A:N.36, A:D.122 pi-Stacking: A:W.120 KYI.6: 13 residues within 4Å: Chain B: Y.10, T.11, L.12, F.30, N.36, F.75, F.77, M.84, V.86, W.120, D.122, D.123, W.126 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.10, B:F.30, B:F.77, B:V.86, B:W.120, B:W.120 Hydrogen bonds: B:N.36, B:N.36, B:D.122 pi-Stacking: B:W.120

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: L.12, K.26, N.36, G.37, G.39, E.59, M.104 Ligands: KYI.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.12 Hydrogen bonds: A:G.39 Water bridges: A:F.30, A:N.36 Salt bridges: A:K.26

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: L.67, H.68, K.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69 Salt bridges: A:H.68, A:K.69 SO4.4: 5 residues within 4Å: Chain A: A.66, H.68, T.91, D.92, S.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.66, A:T.91, A:D.92, A:S.93 Water bridges: A:A.66 Salt bridges: A:H.68 SO4.5: 3 residues within 4Å: Chain A: V.156, D.157, T.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.157, A:T.158 Water bridges: A:R.154, A:T.158 SO4.7: 4 residues within 4Å: Chain B: R.154, V.156, D.157, T.158 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.157, B:D.157, B:T.158 Salt bridges: B:R.154 SO4.8: 3 residues within 4Å: Chain B: L.67, H.68, K.69 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.67, B:K.69 Salt bridges: B:H.68 SO4.9: 3 residues within 4Å: Chain A: Y.151 Chain B: H.137, R.154 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.154 Salt bridges: B:H.137, B:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., MTH1 in complex with TH013071. To Be Published

Release Date

2023-09-27

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

7,8-dihydro-8-oxoguanine triphosphatase

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