SMTL ID : 8h38.1

Cryo-EM Structure of the KBTBD2-CRL3~N8-CSN(mutate) complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-2-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain E: H.140, D.151 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.140, E:D.151, E:D.151 ZN.2: 5 residues within 4Å: Chain L: C.42, C.45, C.53, H.80, C.83 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.42, L:C.45, L:H.80, L:C.83 ZN.3: 4 residues within 4Å: Chain L: C.75, H.77, C.94, D.97 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:C.75, L:H.77, L:C.94, L:D.97, L:D.97 ZN.4: 4 residues within 4Å: Chain L: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.53, L:C.56, L:C.68, L:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Dynamic molecular architecture and substrate recruitment of cullin3-RING E3 ligase CRL3 KBTBD2. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-10-11

Peptides

COP9 signalosome complex subunit 1: A
COP9 signalosome complex subunit 2: B
COP9 signalosome complex subunit 3: C
COP9 signalosome complex subunit 4: D
COP9 signalosome complex subunit 5: E
COP9 signalosome complex subunit 6: F
COP9 signalosome complex subunit 7b: G
COP9 signalosome complex subunit 8: H
Kelch repeat and BTB domain-containing protein 2: IK
Cullin-3: J
E3 ubiquitin-protein ligase RBX1: L
NEDD8: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

K
M

J
L

L
R

M
N

COP9 signalosome complex subunit 1

COP9 signalosome complex subunit 2

COP9 signalosome complex subunit 3

COP9 signalosome complex subunit 4

COP9 signalosome complex subunit 5

COP9 signalosome complex subunit 6

COP9 signalosome complex subunit 7b

COP9 signalosome complex subunit 8

Kelch repeat and BTB domain-containing protein 2

Cullin-3

E3 ubiquitin-protein ligase RBX1

NEDD8

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