SMTL ID : 8tq5.1

Crystal structure of Fab DX17 in complex with MHC-I (HLA-B*44:05)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GLU- GLU- PHE- GLY- ARG- ALA- PHE- SER- PHE: MHC class II antigen(Non-covalent)

GLU-GLU-PHE-GLY-ARG-ALA-PHE-SER-PHE.1: 28 residues within 4Å: Chain A: M.5, Y.7, Y.9, T.24, Y.59, R.62, E.63, I.66, N.70, T.73, N.77, T.80, Y.84, I.95, Y.99, Y.116, Y.123, T.143, K.146, W.147, V.152, Q.155, D.156, Y.159, L.163, S.167, R.170, Y.171 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.59, A:I.66, A:T.73, A:T.80, A:I.95, A:Y.116, A:Y.123, A:W.147, A:V.152, A:V.152, A:Y.159, A:Y.159, A:L.163 Hydrogen bonds: A:Y.7, A:Y.7, A:E.63, A:E.63, A:N.70, A:N.77, A:N.77, A:Y.99, A:Y.99, A:T.143, A:S.167, A:Y.171 Salt bridges: A:R.62, A:K.146, A:R.170

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain C: Q.86, N.88 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, J. et al., Crystal structure of Fab DX17 in complex with MHC-I (HLA-B*44:05). To Be Published

Release Date

2025-02-05

Peptides

HLA class I histocompatibility antigen B alpha chain (HLA-B*44:05): A
Beta-2-microglobulin: B
Fab DX17 H-chain: C
Fab DX17 L-chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

HLA class I histocompatibility antigen B alpha chain (HLA-B*44:05)

Beta-2-microglobulin

Fab DX17 H-chain

Fab DX17 L-chain

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