SMTL ID : 8tq7.1

Crystal structure of Fab.34.2.12 in complex with MHC-I (H2-Dd)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-2-2-2-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain C: C.120 Chain D: I.1 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain F: K.19, Y.80 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.19 Water bridges: F:Y.80, F:Y.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, L.F. et al., Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. (2024)

Release Date

2024-03-20

Peptides

H-2 class I histocompatibility antigen, D-D alpha chain: AC
Beta-2-microglobulin: BD
Transmembrane protein gp41: EJ
Fab.34.2.12 Heavy Chain: FH
Fab 34.2.12 Light Chain: GI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

J
P

F
F

H
H

G
G

I
L

H-2 class I histocompatibility antigen, D-D alpha chain

Beta-2-microglobulin

Transmembrane protein gp41

Fab.34.2.12 Heavy Chain

Fab 34.2.12 Light Chain

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