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SMTL ID : 9fjq.1

Structure of human carbonic anhydrase II complexed with 4-benzyl-5,7,8-trifluoro-3,4-dihydro-2H-benzo[b][1,4]thiazine-6-sulfonamide 1,1-dioxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 01.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x 01: 5,7,8-tris(fluoranyl)-1,1-bis(oxidanylidene)-4-(phenylmethyl)-2,3-dihydro-1$l^{6},4-benzothiazine-6-sulfonamide

01.3:

19 residues within 4Å:

Chain A: W.5, Y.7, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:W.5, A:H.64, A:A.65, A:T.199
Hydrogen bonds: A:T.198, A:T.198
pi-Stacking: A:H.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Vaskevicius, A. et al., Design of Rigid Compounds to Enhance Selectivity for Carbonic Anhydrase IX. Chemistry (2025)

Release Date

2025-05-14

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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