SMTL ID : 9iwo.1

X-ray structure of human PPARalpha ligand binding domain-GW7647-PGC1alpha coactivator peptide co-crystals obtained by cross-seeding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 2VN: 2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid(Non-covalent)

2VN.1: 27 residues within 4Å: Chain A: I.46, L.52, E.56, V.60, I.77, F.78, C.80, C.81, Q.82, T.84, S.85, T.88, Y.119, I.122, M.125, L.126, M.135, V.137, A.138, I.144, I.159, M.160, H.245, V.249, L.261, L.265, Y.269 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.52, A:F.78, A:Q.82, A:T.84, A:T.88, A:I.122, A:V.137, A:I.144, A:I.159, A:L.261 Hydrogen bonds: A:S.85, A:S.85 Water bridges: A:T.88 Salt bridges: A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamata, S. et al., Competitive Ligand-Induced Recruitment of Coactivators to Specific PPAR alpha / delta / gamma Ligand-Binding Domains Revealed by Dual-Emission FRET and X-Ray Diffraction of Cocrystals. Antioxidants (2025)

Release Date

2025-05-07

Peptides

Peroxisome proliferator-activated receptor alpha: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor alpha

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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