P62837 (UB2D2_HUMAN) Homo sapiens (Human)
Ubiquitin-conjugating enzyme E2 D2 UniProtKBProtein AtlasInterProSTRINGInteractive Modelling
It is possible new templates exist for this target since these models were created.
Available Structures
59 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Structure of RNF125 in complex with UbcH5b |
Heteromer Q96EQ8; | 96.6 | 1×GOL; 3×ZN; | |||
| Crystal Structure of a UbcH5b~Ub conjugate |
Heteromer P0CG47; | 96.6 | 2×GOL; | |||
| RNF12 RING domain in complex with Ube2d2 |
Heteromer Q9NVW2; | 97.28 | 1×GOL; 2×ZN; | |||
| The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub |
Heteromer P0CG48; Q96FW1; Q9XVR6; | 99.32 | 4×EDO; 1×MG; | |||
| Structure of UbE2D2:RNF165:Ub complex |
Heteromer P0CG47; Q6ZSG1; | 96.6 | 1×PO4; 2×ZN; | |||
| Structure of RNF165 in complex with a UbcH5b~Ub conjugate |
Heteromer P0CG47; Q6ZSG1; | 97.28 | 2×GOL; 2×SCN; 2×ZN; | |||
| Structure of UbV.d2.3 in complex with Ube2d2-S22R |
Heteromer | 97.28 | 1×GOL; | |||
| UbcH5b~Ubiquitin Conjugate |
Heteromer P0CG48; | 99.32 | 2×GOL; | |||
| Crystal Structure of RNF165 in complex with a UbcH5b~Ub conjugate |
Heteromer P0CG47; Q6ZSG1; | 97.28 | 2×ZN; | |||
| Structure of RNF125 in complex with a UbcH5b~Ub conjugate |
Heteromer Q96EQ8; | 96.6 | 3×ZN; | |||
| Structure of UbE2D2:RNF165:Ub complex |
Heteromer P0CG47; Q6ZSG1; | 97.28 | 2×ZN; | |||
| Crystal structure of the complex between LubX/LegU2/Lpp2887 U-box 1 and Homo sapiens UBE2D2 |
Heteromer Q5X159; | 99.32 | ||||
| Distinct mechanism of MUL1-RING domain simultaneously recruiting E2 enzyme and the substrate p53-TA… |
Heteromer Q969V5; | 100 | 2×ZN; | |||
| Crystal Structure of the UbArk2C-UbcH5b~Ub complex |
Heteromer P0CG48; Q6ZSG1; | 96.6 | 2×ZN; | |||
| PHD Finger Protein 7 (PHF7) in complex with UBE2D2 |
Heteromer Q9DAG9; | 98.64 | 7×ZN; 1×SO4; | |||
| Structure of UbV.d2.1 in complex with Ube2d2 |
Heteromer | 97.96 | ||||
| Crystal structure of human OTUB1/UbcH5b~Ub/Ub |
Heteromer P0CG48; Q96FW1; | 99.32 | ||||
| Structure of the cIAP2 RING domain bound to UbcH5b |
Heteromer P62840; Q13489; | 100 | 4×ZN; | |||
| Crystal structure of human OTUB1/UbcH5b~Ub/Ub |
Heteromer P0CG48; Q96FW1; | 99.32 | ||||
| NMR based structural model of the UbcH5B-CNOT4 complex |
Heteromer O95628; | 100 | 2×ZN; | |||
| Crystal structure of human MDM2 RING domain homodimer bound to UbcH5B-Ub |
Heteromer P62979; Q00987; | 98.63 | 4×ZN; 4×CL; 2×NO3; | |||
| RNF38-UB-UbcH5B-Ub complex |
Heteromer P0CG48; Q9H0F5; | 99.31 | 2×EDO; 2×ZN; | |||
| Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 1) |
Heteromer P0CG47; Q00987; | 98.63 | 4×CL; 2×ZN; 2×EDO; | |||
| Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A) |
Heteromer Q96BH1; | 100 | 1×OXL; 1×PEG; 2×ZN; 2×EDO; | |||
| Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (Y165A) |
Heteromer Q96BH1; | 100 | 1×PEG; 1×OXL; 2×ZN; | |||
| Crystal structure of cIAP1 RING domain bound to UbcH5B-Ub and a non-covalent Ub |
Heteromer P0CG47; Q13490; | 99.31 | 2×ZN; | |||
| Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 |
Heteromer Q96BH1; | 100 | 3×EDO; 1×PEG; 1×OXL; 2×ZN; | |||
| Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub |
Heteromer P0CG47; Q28EY6; Q6P3Q9; | 98.63 | 2×ZN; | |||
| Crystal structure of cat phospho-Ser429 MDM2 RING domain bound to UbcH5B-Ub |
Heteromer P62979; Q7YRZ8; | 98.63 | 4×ZN; | |||
| RNF38-UbcH5B-UB complex |
Heteromer P0CG48; Q9H0F5; | 98.63 | 3×CL; 2×EDO; 2×ZN; | |||
| Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 2) |
Heteromer P0CG47; Q00987; | 98.63 | 1×CL; 2×ZN; 2×EDO; | |||
| Structure of MDM2-MDMX-UbcH5B-ubiquitin complex |
Heteromer O15151; P0CG47; Q00987; | 98.63 | 4×ZN; 1×SO4; | |||
| Structure of BIRC7-UbcH5b-Ub complex. |
Heteromer P0CG48; Q96CA5; | 97.94 | 4×ZN; | |||
| Crystal structure of Cat MDM2-S429E RING domain bound to UbcH5B-Ub |
Heteromer P0CG48; P62979; Q7YRZ8; | 98.63 | 12×EDO; 8×ZN; 3×NO3; | |||
| Structure of phosphoTyr363-Cbl-b - UbcH5B-Ub - ZAP-70 peptide complex |
Heteromer P0CG48; P43403; Q13191; | 98.63 | 2×ZN; 1×CA; 1×EDO; | |||
| Structure of phosphoTyr371-c-Cbl-UbcH5B complex |
Heteromer P22681; | 100 | 2×ZN; 1×K; | |||
| TRIM23 RING domain in complex with UbcH5-Ub |
Heteromer P0CG47; P36406; | 98.63 | 4×ZN; | |||
| Structure of phosphoTyr371-c-Cbl-UbcH5B-ZAP-70 complex |
Heteromer P22681; P43403; | 100.0 | 2×ZN; 1×CA; | |||
| Structure of modified phosphoTyr371-c-Cbl-UbcH5B-ZAP-70 complex |
Heteromer P22681; P43403; | 100 | 2×ZN; 1×CA; | |||
| E2~Ubiquitin-HECT |
Heteromer P0CG48; Q96PU5; | 97.94 | ||||
| RNF12 RING domain in complex with a Ube2d2~Ub conjugate |
Heteromer P0CG48; Q9NVW2; | 96.58 | 2×ZN; 2×IOD; | |||
| Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub |
Heteromer O43567; P0CG47; | 99.31 | 2×ZN; | |||
| E2~Ubiquitin-HECT |
Heteromer P0CG48; Q96PU5; | 97.94 | ||||
| Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome |
Heteromer O60814; P04908; P0CG47; P35226; P62805; P68431; Q99496; | 97.94 | 4×ZN; | |||
| Ubiquitin Ligation to substrate by a cullin-RING E3 ligase at 3.7A resolution: NEDD8-CUL1-RBX1 N98R… |
Heteromer H2QLR9; P0CG48; P25963; P63208; Q13616; Q15843; Q9Y297; | 97.94 | 3×ZN; | |||
| C(N)RL4CSA-UVSSA-E2-ubiquitin complex. |
Heteromer A0A6P5C4T4; P0CG48; P62877; Q13216; Q13619; Q15843; Q16531; Q2YD98; | 100 | 3×ZN; | |||
| CRL4CSA-E2-Ub (state 2) |
Heteromer P0CG48; P62877; Q13216; Q13619; Q15843; Q16531; | 100 | 3×ZN; | |||
| Structure of the HOIP-RBR/UbcH5B~ubiquitin transfer complex |
Heteromer P0CG47; Q96EP0; | 98.62 | 8×ZN; | |||
| Ubch5B-RING3 of MIB1 fusion structure | homo-2-mer | 100 | 5×ZN; | |||
| Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b, wild-type | monomer | 100 | ||||
| Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ser94Gly | monomer | 99.32 | ||||
| Human Ubiquitin-Conjugating Enzyme (E2) UbcH5b mutant Ile37Ala | monomer | 99.32 | ||||
| Human ubiquitin-conjugating enzyme (E2) UbcH5b mutant Ile88Ala | monomer | 99.32 | 1×CL; 1×MPD; | |||
| Crystal structure of human UBC4 E2 conjugating enzyme | monomer | 99.32 | ||||
| ubiquitin-conjugating enzyme, Ube2D2 | monomer | 100 | ||||
| Crystal structure of the human ubiquitin-conjugating enzyme (E2) UbcH5b | monomer | 100 | ||||
| Crystal structure of human ubiquitin-conjugating enzyme UbcH5B | monomer | 100 | 1×SO4; 2×GOL; | |||
| PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker | monomer | 98.64 | 8×ZN; | |||
| NMR solution structure of the ubiquitin conjugating enzyme UbcH5B | monomer | 100 | ||||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7bol.1.A | monomer | 0.88 | 100.00 | |||
1 SWISS-MODEL model built on isoform sequence
| Isoform | Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 1z2u.1.A | monomer | 0.88 | 94.92 | |||