SMTL ID : 5d0m.1

Structure of UbE2D2:RNF165:Ub complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: L.109, S.113 Chain C: I.44, H.68, V.70 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.113, A:S.113, A:S.113 Water bridges: A:S.113, A:S.113, C:H.68 Salt bridges: C:H.68

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.53, H.55, C.72, C.75 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:H.55, B:C.72, B:C.75 ZN.3: 4 residues within 4Å: Chain B: C.35, C.38, H.58, C.61 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.35, B:C.38, B:H.58, B:C.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, J.D. et al., Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity. Nat.Struct.Mol.Biol. (2016)

Release Date

2015-12-09

Peptides

Ubiquitin-conjugating enzyme E2 D2: A
RING finger protein 165: B
Polyubiquitin-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Ubiquitin-conjugating enzyme E2 D2

RING finger protein 165

Polyubiquitin-B

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