P62987 (RL40_HUMAN) Homo sapiens (Human)

Ubiquitin-60S ribosomal protein L40 UniProtKBInterProSTRINGInteractive Modelling

128 aa; Sequence (Fasta) ; 108 identical sequences

Available Structures

58 Experimental Structures

DescriptionOligo-stateLigandsStructureRange
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: Rsp5 and UbV R5.4 Heteromer
P39940;
1-77
Assess
Lys27-linked di-ubiquitin Heteromer
P0CG47;
MG;1-76
Assess
Lys63-linked di-ubiquitin Heteromer
P0CG47;
1-76
Assess
Lys27-linked diubiquitin Heteromer
MG;1-76
Assess
Structure of an active ligase (HOIP)/ubiquitin transfer complex Heteromer
P63048; Q96EP0;
ZN;IMD;1-76
Assess
Lys48-linked di-ubiquitin Heteromer
P0CG47;
1-76
Assess
Lys27-linked triubiquitin Heteromer
1-76
Assess
Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin Heteromer
Q13137;
GOL;ACT;ZN;1-76
Assess
Lys27-linked triubiquitin Heteromer
NO3;1-76
Assess
Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex Heteromer
P63048; Q96EP0;
ZN;1-76
Assess
Nedd4 HECT:Ub complex Heteromer
P46934; P63048;
1-76
Assess
Solution structure of the Rpn1 T1 site engaging two monoubiquitin molecules Heteromer
P38764;
1-76
Assess
Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the extended binding mode Heteromer
P38764;
1-76
Assess
Solution Structure of the Human FAAP20 UBZ-Ubiquitin Complex Heteromer
Q6NZ36;
ZN;1-76
Assess
NMR structure of EKLF(22-40)/Ubiquitin Complex Heteromer
Q13351;
1-76
Assess
Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the contracted binding mode Heteromer
P38764;
1-76
Assess
Cryo-EM structure of USP1-UAF1 bound to mono-ubiquitinated FANCD2, and FANCI Heteromer
O94782; Q8TAF3; Q9BXW9; Q9NVI1;
ZN;1-76
Assess
Structure of the 26S proteasome-Ubp6 complex Heteromer
O13563; O94742; P21242; P21243; P22141; P23638; P23639; P23724; P25043; P25451; P30656; P30657; P32379; P32496; P32565; P33297; P33298; P33299; P38624; P38764; P38886; P40016; P40302; P40303; P40327; P43588; P43593; P53549; Q01939; Q04062; Q06103; Q08723; Q12250; Q12377;
1-76
Assess
K11/K63-branched tri-Ubiquitin Heteromer
P0CG47;
1-75
Assess
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in compl… Heteromer
M4STU1;
ZN;PGO;3CN;1-75
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: NEDD4L and UbV N… Heteromer
Q96PU5;
1-75
Assess
Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant Heteromer
Q12888;
1-75
Assess
Crystal structure of covalent ubiquitin-USP21 complex Heteromer
Q9UK80;
ZN;NEH;1-75
Assess
Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in compl… Heteromer
M4STU1;
ZN;SO4;3CN;1-75
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1, Ubv P2.3 a… Heteromer
P68036; Q9H0M0;
1-75
Assess
Bro1 V domain and ubiquitin Heteromer
G0VBG6;
1-75
Assess
Lys6-linked di-ubiquitin Heteromer
P0CG47;
1-74
Assess
Linear tri-ubiquitin Heteromer
P0CG47;
1-74
Assess
Structure of the Smurf2 HECT Domain with a High Affinity Ubiquitin Variant (UbV) Heteromer
Q9HAU4;
SO4;NA;CL;DTT;EDO;1-74
Assess
Lys11-linked diubiquitin Heteromer
P0CG47;
NA;1-73
Assess
Lys33-linked di-ubiquitin Heteromer
P0CG47;
1-73
Assess
Lys29-linked di-ubiquitin Heteromer
P0CG47;
1-73
Assess
System-wide modulation of HECT E3 ligases with selective ubiquitin variant probes: WWP1 and UbV P1.1 Heteromer
Q9H0M0;
1-73
Assess
Linear tetra-ubiquitin Heteromer
P0CG47;
1-73
Assess
Crystal structure of TRABID NZF1 in complex with K29 linked di-Ubiquitin Heteromer
A6QP16;
ZN;1-73
Assess
Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain Heteromer
O95786; Q7Z434;
1-73
Assess
Yeast Npl4 in complex with Lys48-linked diubiquitin Heteromer
P33755; P62984;
GLC;ZN;BCN;1-72
Assess
Cryo-EM structure of the human Ebp1 - 80S ribosome Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96L21; Q9UQ80; Q9Y3U8;
41×MG;ZN;77-128
Assess
Tetracenomycin X bound to the human ribosome Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P62945; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q96L21; Q9Y3U8;
229×MG;OCW;ZN;77-128
Assess
Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A Heteromer
A0A087WNH4; A0A5F9D391; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SV32; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SYU7; G1T0C1; G1T6D1; G1TL06; G1TN82; G1TSG1; G1TUB8; G1TUN8; G1TVT6; G1TX70; G1TXF6; G1U7L1; G1U945; O76094; P08240; P09132; P37108; P49458; P61011; P63048; Q3T0W9; Q9UHB9; Q9Y5M8; U3KNW6; U3KPD5;
ZN;MG;GTP;GNP;77-128
Assess
RNC-SRP early complex Heteromer
A0A087WNH4; A0A287B929; A0A5F9D391; A0A5F9D5B2; B7NZQ2; G1SE28; G1SE76; G1SF08; G1SHG0; G1SHQ2; G1SIT5; G1SKF7; G1SNY0; G1SQH0; G1STW0; G1SV32; G1SVW5; G1SWI6; G1SY53; G1SYJ6; G1SYU7; G1T0C1; G1T6D1; G1TDL2; G1TL06; G1TN82; G1TSG1; G1TTQ5; G1TTY7; G1TUB8; G1TUN8; G1TVT6; G1TX70; G1TXF6; G1U7L1; G1U945; J9PAS6; P16255; P18962; P21262; P33731; P61010; P63048; Q00004; Q3T0W9; U3KNW6; U3KPD5;
97×MG;ZN;GDP;77-128
Assess
Structure of the mammalian 60S ribosomal subunit Heteromer
A1XQU3; A1XQU5; F1RGC0; F1S530; F1S935; F2Z522; F2Z546; F2Z554; F2Z567; F2Z568; I3L7Y1; I3LP78; I3LSD3; K7GP63; P49666; P62831; P62901; P63053; P67985; P83884; Q29205; Q29223; Q29361; Q6QAT0; Q95281; Q95342;
130×MG;ZN;77-128
Assess
Structure of the idle mammalian ribosome-Sec61 complex Heteromer
A0A286ZL65; A0A287APR1; A0A287ASD0; A0A287B386; A0A4X1SH42; A0A4X1SN08; A0A4X1TBV3; A0A4X1TXJ8; A0A4X1V977; A0A4X1VIM4; A0A4X1W0N5; A0A4X1W808; A1XQU3; A1XQU5; F1SJJ5; F2Z568; I3LP78; P49666; P62901; P63053; P67985; Q29195; Q29205; Q29223; Q29361; Q2YGT9; Q6QAT0; Q95281;
130×MG;ZN;77-128
Assess
Mus musculus brain neocortex ribosome 60S bound to Ebp1 Heteromer
O09167; O55142; P12970; P14115; P14148; P19253; P27659; P35980; P41105; P47911; P47915; P47962; P47963; P47964; P50580; P51410; P62717; P62751; P62830; P62889; P62900; P62911; P62918; P62947; P67984; P84099; Q4FZH2; Q4VAF2; Q505A8; Q5BLJ9; Q5M9K3; Q5M9P1; Q6ZWV3; Q6ZWV7; Q8BP67; Q9CPR4; Q9CR57; Q9CXW4; Q9CZM2; Q9D1R9; Q9D823; Q9D8E6; Q9JJI8;
247×MG;ZN;78-127
Assess
Cryo-EM structure of a pre-60S ribosomal subunit - state C Heteromer
P18077; P18124; P18621; P26373; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P63173; P83731; P83881; P84098; Q02543; Q02878; Q07020; Q969S3; Q96D46; Q96L21; Q9Y3U8;
251×MG;79-125
Assess
Crystal structure of K29 linked di-Ubiquitinhomo-2-merIOD;EDO;1-76
Assess
X-ray crystal structure of the K33S mutant of ubiquitinmonomerCA;CL;1-76
Assess
U7Ub7 Disulfide variantmonomerPO4;1-76
Assess
Solution structure of V26A mutant of Ubiquitin at pH 6.0monomer1-76
Assess
Solution nmr structure of ubiquitin refined against dipolar couplings in 4 mediamonomer1-76
Assess
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protei…monomer1-76
Assess
Description of the Structural fluctuations of proteins from structure-based calculations of Residua…monomer1-76
Assess
Alternative structure of Ubiquitinmonomer1-76
Assess
Solution structure of V26A mutant of Ubiquitin at pH 2.0monomer1-76
Assess
X-ray crystal structure of the K11S/K63S double mutant of ubiquitinmonomerGOL;1-75
Assess
Crystal structure of the ubiquitin K11S mutantmonomerCA;CL;1-75
Assess
Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstr…monomerGD;SO4;1-75
Assess
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion proteinmonomerEDO;7-71
Assess

1 Homology model

Oligo-stateLigandsQMEANDisCoTemplateRangeSeq id (%)
monomer0.667bbd.1.A1-115
72.97
Assess

Alignments