SMTL ID : 4ljo.1

Structure of an active ligase (HOIP)/ubiquitin transfer complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.22, C.25, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.22, A:C.25, A:C.41, A:C.44 ZN.2: 4 residues within 4Å: Chain A: C.49, C.52, H.77, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.49, A:C.52, A:H.77, A:C.81 ZN.3: 4 residues within 4Å: Chain A: C.62, C.67, H.74, H.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.62, A:C.67, A:H.74, A:H.76 ZN.4: 4 residues within 4Å: Chain A: C.120, C.137, C.149, H.152 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.120, A:C.137, A:C.149, A:H.152 ZN.6: 6 residues within 4Å: Chain A: C.36, H.38 Chain B: M.1, E.16, V.17 Ligands: IMD.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.36, A:H.38

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: C.36, H.38 Chain B: M.1, V.17, E.18, P.19 Ligands: ZN.6 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stieglitz, B. et al., Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature (2013)

Release Date

2013-10-16

Peptides

E3 ubiquitin-protein ligase RNF31: A
Polyubiquitin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase RNF31

Polyubiquitin-C

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