SMTL ID : 1ben.13 (12 other biounits)

INSULIN COMPLEXED WITH 4-HYDROXYBENZAMIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.10 Chain C: H.10 Chain E: H.10 Ligands: ZN.5, ZN.9 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:H.10, E:H.10, C:H.10, H2O.1, H2O.4 ZN.2: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: CL.3, ZN.6, CL.7, ZN.10, CL.11 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D Metal complexes: F:H.10, B:H.10, D:H.10 ZN.5: 5 residues within 4Å: Chain A: H.10 Chain C: H.10 Chain E: H.10 Ligands: ZN.1, ZN.9 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:H.10, E:H.10, C:H.10, H2O.1, H2O.4 ZN.6: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, CL.7, ZN.10, CL.11 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D Metal complexes: F:H.10, B:H.10, D:H.10 ZN.9: 5 residues within 4Å: Chain A: H.10 Chain C: H.10 Chain E: H.10 Ligands: ZN.1, ZN.5 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:H.10, E:H.10, C:H.10, H2O.1, H2O.4 ZN.10: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, ZN.6, CL.7, CL.11 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain D Metal complexes: F:H.10, B:H.10, D:H.10

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, ZN.6, CL.7, ZN.10, CL.11 Ligand excluded by PLIP CL.7: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, ZN.6, ZN.10, CL.11 Ligand excluded by PLIP CL.11: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, ZN.6, CL.7, ZN.10 Ligand excluded by PLIP

3 x HBD: 4-HYDROXYBENZAMIDE(Non-covalent)

HBD.4: 9 residues within 4Å: Chain A: S.9 Chain B: H.10, E.13, A.14, Y.16, L.17 Chain C: H.10, E.13 Chain D: S.9 9 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D, 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:H.10, C:E.13, D:S.9, B:H.10, B:E.13 Hydrophobic interactions: B:E.13, B:L.17 Water bridges: A:S.9, A:S.9 HBD.8: 9 residues within 4Å: Chain C: S.9 Chain D: H.10, E.13, A.14, Y.16, L.17 Chain E: H.10, E.13 Chain F: S.9 9 PLIP interactions: 1 interactions with chain F, 2 interactions with chain C, 4 interactions with chain D, 2 interactions with chain E Hydrogen bonds: F:S.9, D:H.10, D:E.13, E:H.10, E:E.13 Water bridges: C:S.9, C:S.9 Hydrophobic interactions: D:E.13, D:L.17 HBD.12: 9 residues within 4Å: Chain A: H.10, E.13 Chain B: S.9 Chain E: S.9 Chain F: H.10, E.13, A.14, Y.16, L.17 9 PLIP interactions: 4 interactions with chain F, 2 interactions with chain E, 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: F:E.13, F:L.17 Hydrogen bonds: F:H.10, F:E.13, A:H.10, A:E.13, B:S.9 Water bridges: E:S.9, E:S.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, G.D. et al., A novel complex of a phenolic derivative with insulin: structural features related to the T-->R transition. Protein Sci. (1996)

Release Date

1996-07-11

Peptides

HUMAN INSULIN: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
B

D
D

E
B

F
D

HUMAN INSULIN

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