SMTL ID : 1ben.9 (12 other biounits)

INSULIN COMPLEXED WITH 4-HYDROXYBENZAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-6-3-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.10 Chain D: H.10 Chain G: H.10 Ligands: ZN.6, ZN.11 5 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: G:H.10, D:H.10, A:H.10, H2O.1, H2O.5 ZN.3: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: CL.4, ZN.8, CL.9, ZN.13, CL.14 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain F Metal complexes: I:H.10, C:H.10, F:H.10 ZN.6: 5 residues within 4Å: Chain A: H.10 Chain D: H.10 Chain G: H.10 Ligands: ZN.1, ZN.11 5 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: G:H.10, D:H.10, A:H.10, H2O.1, H2O.5 ZN.8: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: ZN.3, CL.4, CL.9, ZN.13, CL.14 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain F Metal complexes: I:H.10, C:H.10, F:H.10 ZN.11: 5 residues within 4Å: Chain A: H.10 Chain D: H.10 Chain G: H.10 Ligands: ZN.1, ZN.6 5 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: G:H.10, D:H.10, A:H.10, H2O.1, H2O.5 ZN.13: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: ZN.3, CL.4, ZN.8, CL.9, CL.14 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain C, 1 interactions with chain F Metal complexes: I:H.10, C:H.10, F:H.10

6 x HBD: 4-HYDROXYBENZAMIDE(Non-covalent)

HBD.2: 13 residues within 4Å: Chain B: C.6, S.9, I.10, C.11, L.16 Chain C: H.10, L.11, A.14 Chain D: Y.16, L.17 Chain F: H.5, L.6 Ligands: HBD.5 8 PLIP interactions: 4 interactions with chain D, 1 interactions with chain F, 1 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: D:L.17, C:L.11 Water bridges: D:Y.16, D:L.17, D:L.17 pi-Stacking: F:H.5 Hydrogen bonds: B:C.6, B:C.11 HBD.5: 10 residues within 4Å: Chain A: S.9 Chain C: H.10, E.13, A.14, Y.16, L.17 Chain D: H.10, E.13 Chain F: S.9 Ligands: HBD.2 9 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A, 2 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: C:E.13, C:L.17 Hydrogen bonds: C:H.10, C:E.13, D:H.10, D:E.13, F:S.9 Water bridges: A:S.9, A:S.9 HBD.7: 13 residues within 4Å: Chain E: C.6, S.9, I.10, C.11, L.16 Chain F: H.10, L.11, A.14 Chain G: Y.16, L.17 Chain I: H.5, L.6 Ligands: HBD.10 8 PLIP interactions: 1 interactions with chain F, 1 interactions with chain I, 2 interactions with chain E, 4 interactions with chain G Hydrophobic interactions: F:L.11, G:L.17 pi-Stacking: I:H.5 Hydrogen bonds: E:C.6, E:C.11 Water bridges: G:Y.16, G:L.17, G:L.17 HBD.10: 10 residues within 4Å: Chain D: S.9 Chain F: H.10, E.13, A.14, Y.16, L.17 Chain G: H.10, E.13 Chain I: S.9 Ligands: HBD.7 9 PLIP interactions: 2 interactions with chain D, 4 interactions with chain F, 2 interactions with chain G, 1 interactions with chain I Water bridges: D:S.9, D:S.9 Hydrophobic interactions: F:E.13, F:L.17 Hydrogen bonds: F:H.10, F:E.13, G:H.10, G:E.13, I:S.9 HBD.12: 13 residues within 4Å: Chain A: Y.16, L.17 Chain C: H.5, L.6 Chain H: C.6, S.9, I.10, C.11, L.16 Chain I: H.10, L.11, A.14 Ligands: HBD.15 8 PLIP interactions: 2 interactions with chain H, 4 interactions with chain A, 1 interactions with chain C, 1 interactions with chain I Hydrogen bonds: H:C.6, H:C.11 Hydrophobic interactions: A:L.17, I:L.11 Water bridges: A:Y.16, A:L.17, A:L.17 pi-Stacking: C:H.5 HBD.15: 10 residues within 4Å: Chain A: H.10, E.13 Chain C: S.9 Chain G: S.9 Chain I: H.10, E.13, A.14, Y.16, L.17 Ligands: HBD.12 9 PLIP interactions: 2 interactions with chain A, 2 interactions with chain G, 1 interactions with chain C, 4 interactions with chain I Hydrogen bonds: A:H.10, A:E.13, C:S.9, I:H.10, I:E.13 Water bridges: G:S.9, G:S.9 Hydrophobic interactions: I:E.13, I:L.17

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: ZN.3, ZN.8, CL.9, ZN.13, CL.14 Ligand excluded by PLIP CL.9: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: ZN.3, CL.4, ZN.8, ZN.13, CL.14 Ligand excluded by PLIP CL.14: 11 residues within 4Å: Chain C: L.6, H.10 Chain F: L.6, H.10 Chain I: L.6, H.10 Ligands: ZN.3, CL.4, ZN.8, CL.9, ZN.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, G.D. et al., A novel complex of a phenolic derivative with insulin: structural features related to the T-->R transition. Protein Sci. (1996)

Release Date

1996-07-11

Peptides

HUMAN INSULIN: ACDFGI
HUMAN INSULIN: BEH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
D

D
B

F
D

G
B

I
D

B
C

E
C

H
C

HUMAN INSULIN

HUMAN INSULIN

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