SMTL ID : 1xw7.2 (3 other biounits)

Diabetes-Associated Mutations in Human Insulin: Crystal Structure and Photo-Cross-Linking Studies of A-Chain Variant Insulin Wakayama

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-3-3-mer

Ligands

3 x IPH: PHENOL(Non-covalent)

IPH.1: 7 residues within 4Å: Chain A: C.6, I.10, C.11 Chain B: H.10, L.11, A.14 Chain F: H.5 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain F, 1 interactions with chain A Hydrophobic interactions: B:H.10, B:L.11, B:A.14 pi-Stacking: F:H.5 Hydrogen bonds: A:C.11 IPH.4: 7 residues within 4Å: Chain B: H.5 Chain C: C.6, I.10, C.11 Chain D: H.10, L.11, A.14 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: D:H.10, D:L.11, D:A.14 Hydrogen bonds: C:C.11 pi-Stacking: B:H.5 IPH.7: 7 residues within 4Å: Chain D: H.5 Chain E: C.6, I.10, C.11 Chain F: H.10, L.11, A.14 5 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F, 1 interactions with chain D Hydrogen bonds: E:C.11 Hydrophobic interactions: F:H.10, F:L.11, F:A.14 pi-Stacking: D:H.5

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: CL.3, ZN.5, CL.6, ZN.8, CL.9 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain D Metal complexes: B:H.10, F:H.10, D:H.10 ZN.5: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: ZN.2, CL.3, CL.6, ZN.8, CL.9 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain D Metal complexes: B:H.10, F:H.10, D:H.10 ZN.8: 8 residues within 4Å: Chain B: H.10 Chain D: H.10 Chain F: H.10 Ligands: ZN.2, CL.3, ZN.5, CL.6, CL.9 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain D Metal complexes: B:H.10, F:H.10, D:H.10

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, ZN.5, CL.6, ZN.8, CL.9 Ligand excluded by PLIP CL.6: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, ZN.5, ZN.8, CL.9 Ligand excluded by PLIP CL.9: 11 residues within 4Å: Chain B: L.6, H.10 Chain D: L.6, H.10 Chain F: L.6, H.10 Ligands: ZN.2, CL.3, ZN.5, CL.6, ZN.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wan, Z.L. et al., Diabetes-associated mutations in human insulin: crystal structure and photo-cross-linking studies of a-chain variant insulin wakayama. Biochemistry (2005)

Release Date

2005-04-12

Peptides

Insulin: ACE
Insulin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

E
C

B
D

D
D

F
D

Insulin

Insulin

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