SMTL ID : 1ev6.1

Structure of the monoclinic form of the M-cresol/insulin R6 hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-6-6-mer

Ligands

7 x CRS: M-CRESOL(Non-covalent)

CRS.1: 9 residues within 4Å: Chain A: C.6, S.9, I.10, C.11, L.16 Chain B: L.11, A.14 Chain F: H.5 Chain H: L.17 5 PLIP interactions: 1 interactions with chain H, 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: H:L.17, A:L.16, B:L.11, B:A.14 Hydrogen bonds: A:C.11 CRS.2: 5 residues within 4Å: Chain A: L.13, Y.14 Chain G: L.13, Y.14, E.17 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain A Hydrophobic interactions: G:L.13, G:L.13, G:Y.14, A:L.13, A:Y.14 Hydrogen bonds: G:E.17 CRS.6: 10 residues within 4Å: Chain C: C.6, S.9, I.10, C.11, L.16 Chain D: C.7, L.11, A.14 Chain J: L.17 Chain L: H.5 6 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C, 1 interactions with chain J Hydrophobic interactions: D:L.11, D:A.14, C:I.10, C:L.16, J:L.17 Hydrogen bonds: C:C.11 CRS.9: 9 residues within 4Å: Chain E: C.6, S.9, I.10, C.11 Chain F: C.7, H.10, L.11 Chain J: H.5, L.6 6 PLIP interactions: 1 interactions with chain J, 3 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: J:L.6, E:I.10, F:H.10, F:L.11 Hydrogen bonds: E:C.6, E:C.11 CRS.10: 10 residues within 4Å: Chain B: L.17 Chain D: H.5 Chain G: C.6, S.9, I.10, C.11, L.16 Chain H: H.10, L.11, A.14 7 PLIP interactions: 1 interactions with chain D, 2 interactions with chain G, 1 interactions with chain B, 3 interactions with chain H pi-Cation interactions: D:H.5 Hydrophobic interactions: G:L.16, B:L.17, H:H.10, H:L.11, H:A.14 Hydrogen bonds: G:C.11 CRS.11: 11 residues within 4Å: Chain B: H.5 Chain D: L.17 Chain I: C.6, S.9, I.10, C.11, L.16 Chain J: C.7, H.10, L.11, A.14 6 PLIP interactions: 2 interactions with chain I, 3 interactions with chain J, 1 interactions with chain D Hydrophobic interactions: I:L.16, J:H.10, J:L.11, J:A.14, D:L.17 Hydrogen bonds: I:C.11 CRS.12: 9 residues within 4Å: Chain F: L.17 Chain H: H.5 Chain K: C.6, S.9, I.10, C.11 Chain L: C.7, L.11, A.14 4 PLIP interactions: 1 interactions with chain K, 2 interactions with chain L, 1 interactions with chain F Hydrogen bonds: K:C.11 Hydrophobic interactions: L:L.11, L:A.14, F:L.17

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.4 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.7: 4 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.8 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.3 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.7 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain C: N.21 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, G.D. et al., R6 Hexameric Insulin Complexed with m-Cresol or Resorcinol. Biochem.Biophys.Res.Commun. (2000)

Release Date

2000-12-04

Peptides

INSULIN: ACEGIK
INSULIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

INSULIN

INSULIN

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