SMTL ID : 5uqa.1

Insulin with proline analog FzP at position B28 in the R6 state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

hetero-6-6-mer

Ligands

6 x IPH: PHENOL(Non-covalent)

IPH.1: 7 residues within 4Å: Chain A: C.6, S.9, I.10, C.11 Chain B: H.10, L.11 Chain F: H.5 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: B:H.10, B:L.11 Hydrogen bonds: A:C.11 pi-Stacking: F:H.5 IPH.4: 7 residues within 4Å: Chain C: C.6, S.9, I.10, C.11 Chain D: H.10, L.11 Chain L: H.5 4 PLIP interactions: 1 interactions with chain L, 2 interactions with chain D, 1 interactions with chain C pi-Cation interactions: L:H.5 Hydrophobic interactions: D:H.10, D:L.11 Hydrogen bonds: C:C.11 IPH.6: 8 residues within 4Å: Chain E: C.6, S.9, I.10, C.11 Chain F: H.10, L.11, A.14 Chain J: H.5 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F, 1 interactions with chain J Hydrogen bonds: E:C.6, E:C.11 Hydrophobic interactions: F:L.11, F:A.14 pi-Cation interactions: J:H.5 IPH.10: 8 residues within 4Å: Chain D: H.5, L.6 Chain G: C.6, S.9, I.10, C.11 Chain H: H.10, L.11 6 PLIP interactions: 2 interactions with chain D, 2 interactions with chain H, 2 interactions with chain G Hydrophobic interactions: D:L.6, H:H.10, H:L.11 pi-Stacking: D:H.5 Hydrogen bonds: G:C.6, G:C.11 IPH.12: 9 residues within 4Å: Chain B: V.2, H.5, L.6 Chain I: C.6, S.9, I.10, C.11 Chain J: H.10, L.11 5 PLIP interactions: 2 interactions with chain J, 2 interactions with chain B, 1 interactions with chain I Hydrophobic interactions: J:H.10, J:L.11, B:L.6 pi-Cation interactions: B:H.5 Hydrogen bonds: I:C.11 IPH.16: 9 residues within 4Å: Chain H: V.2, H.5, L.6 Chain K: C.6, S.9, I.10, C.11 Chain L: H.10, L.11 6 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K, 2 interactions with chain H Hydrophobic interactions: L:H.10, L:L.11, H:L.6 Hydrogen bonds: K:C.6, K:C.11 pi-Stacking: H:H.5

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.3 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain J Metal complexes: F:H.10, B:H.10, J:H.10 ZN.5: 4 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.11 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.5 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.7: 3 residues within 4Å: Chain E: E.17, N.18, C.20 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.18 NA.8: 4 residues within 4Å: Chain F: H.10, E.13 Chain J: S.9 Ligands: GOL.15 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J Hydrogen bonds: F:H.10, J:S.9 NA.9: 1 residues within 4Å: Chain F: N.3 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.3, F:N.3 NA.13: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain J Water bridges: J:N.3 NA.14: 4 residues within 4Å: Chain F: H.10 Chain J: S.9, H.10 Ligands: GOL.15 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:H.10 NA.17: 2 residues within 4Å: Chain K: T.8, S.9 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:T.8 Water bridges: K:T.8, K:I.10

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 2 residues within 4Å: Ligands: NA.8, NA.14 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain L Water bridges: B:H.10, D:E.13, H:H.10, L:H.10 Hydrogen bonds: J:E.13

1 x ACN: ACETONE(Non-covalent)

ACN.18: 8 residues within 4Å: Chain C: T.8, S.9, I.10 Chain L: F.1, V.2, N.3, Q.4, H.5 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:V.2 Hydrogen bonds: L:Q.4, L:H.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lieblich, S.A. et al., Insulin with proline analog FzP at position B28 in the R6 state. To Be Published

Release Date

2018-02-21

Peptides

Insulin, chain A: ACEGIK
Insulin, chain B: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Insulin, chain A

Insulin, chain B

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